Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  123 bits (308), Expect = 8e-33
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 87  GTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAMNIM 146
           GT   GRD+ ++V  G ++S+AVG  A +    +  + G +AGY GG++D+ +   + I+
Sbjct: 121 GTDSNGRDMLARVMLGGQISIAVGILASLVSLGIGVLYGATAGYIGGRVDNVMMRFVEIL 180

Query: 147 LVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREKEFVKAAEVLG 206
             +P   L+ VL  F G +  L I L+IG   W   AR+VR QT+AL+ +EFV AA+ LG
Sbjct: 181 YSLPFVFLVVVLVVFFGRSFIL-IFLVIGAVEWLDMARIVRGQTLALKRREFVGAAQALG 239

Query: 207 ESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGIMLYNVQT 265
            S W+II   I+PN I  V       V   I++E+ +SFLGLG      SWG +   +  
Sbjct: 240 LSDWQIIRRHIIPNTIGPVVVFVTVVVPKVILLESFLSFLGLGVQAPLTSWGAL---ISE 296

Query: 266 SSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
            ++ +  A W L+ P +   L +  L  +   + +  +P+ R
Sbjct: 297 GANNIQSAPWLLIFPAIFFVLTLFSLNFVGDGLRDALDPKDR 338