Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  137 bits (346), Expect = 3e-37
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 8/226 (3%)

Query: 85  ILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAMN 144
           + G  R+GRDV+S+V  G+++SL++G         L  V+G  +GY+GG+ID  +   ++
Sbjct: 148 LFGADRLGRDVFSRVVQGSQISLSIGLVGVFFSLLLGVVLGGISGYYGGRIDFVMQRVID 207

Query: 145 IMLVIPQYPLLFVLAAFIGEAGPLT-----IALIIGCTSWAWGARVVRSQTMALREKEFV 199
            +L +P  P+   +AA + +  P T     I +I+  T WA  ARVVR + ++LR +EFV
Sbjct: 208 FVLSLPTIPIWLAMAAALPQGWPATLQYMMITIILSLTGWAQLARVVRGRFLSLRTEEFV 267

Query: 200 KAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGI 258
            AA + G    RIIF  +LP+  S + AS   +V   I+ E ++SFLGLG  P TISWG+
Sbjct: 268 AAARLDGVPEGRIIFRHMLPSFSSHIIASVTLAVPAMILAETSLSFLGLGLQPPTISWGV 327

Query: 259 MLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANP 304
           +L   Q   S+    W  L  P +++ + V  L LL   + + A+P
Sbjct: 328 LLREAQNIRSIATAPW--LFLPGVAVVVAVMALNLLGDGLRDAADP 371