Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  124 bits (312), Expect = 2e-33
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 30/305 (9%)

Query: 5   WKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGW 64
           W   R NR A+IG+ +  L  L+AV A ++  H+P ++            + A   P  W
Sbjct: 26  WFYFRQNRGAVIGLAVFILLVLIAVFAAVIAPHDPTQQ-----------YRDALLVPPVW 74

Query: 65  IAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVI 124
                           +A  +LGT  +GRD+ S++ YGA+ SL +G            VI
Sbjct: 75  ------------QDGGRAAFLLGTDAVGRDMLSRLIYGAQYSLFIGVVVVSIALVGGIVI 122

Query: 125 GVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALI-IGCTSWAWGA 183
           G+ AG+FGG +D  +   M+++L  P   L  VL A +G    LT A+I I        A
Sbjct: 123 GLVAGFFGGWVDTVIMRVMDVILAFPSLLLALVLVAILGPG--LTNAMIAIAIVYQPHFA 180

Query: 184 RVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATI 243
           R+ R+  M+   +E+V AA V G  + R++F  ILPN ++ +      S   A++  A +
Sbjct: 181 RLTRAAVMSELRREYVTAARVAGAGNLRLMFKTILPNCLAPLIVQATLSFSSAVLDAAAL 240

Query: 244 SFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIA 302
            FLG+G  P    WG ML   +     ++ AWW +  P L++ + V  + L+   + +  
Sbjct: 241 GFLGMGAQPPASEWGTMLAEAR---EFILRAWWVVTLPGLTILISVLAINLMGDGLRDAL 297

Query: 303 NPQLR 307
           +P+L+
Sbjct: 298 DPKLK 302