Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  159 bits (401), Expect = 1e-43
 Identities = 100/305 (32%), Positives = 152/305 (49%), Gaps = 32/305 (10%)

Query: 6   KLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWI 65
           K+   N  A++G+  L    + A+ APL+   +P +    P  +P               
Sbjct: 58  KIFLTNPNAIVGLLFLATVLIAALIAPLIYPGDPLEMVARPFLWPG-------------- 103

Query: 66  AENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIG 125
                         + A + LGT  MGRDV + + +GAR+SL VG  A +    +   IG
Sbjct: 104 --------------QNAAYPLGTDSMGRDVLAGIVHGARISLTVGVVATLIGLTIGISIG 149

Query: 126 VSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARV 185
             AGYFGG IDD L   + I   +P + LL VL A I +    T+   IG  +W   AR+
Sbjct: 150 AFAGYFGGVIDDILVKLIEIFQTLPNFVLLVVLVA-IAQPSVTTVTSAIGIITWPLVARL 208

Query: 186 VRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISF 245
            R++  A+REK++V AA  LG    RI+F EILPN +  +  +    V  AI+MEA +SF
Sbjct: 209 TRAEFRAIREKDYVLAARSLGYGHARIVFQEILPNALPPIIVTSSVMVAGAILMEAALSF 268

Query: 246 LGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQ 305
           +GLGDPN +SWG M   + +   ++  AW+    P L++   V  L L++  +++  NP+
Sbjct: 269 MGLGDPNRVSWGSM---IGSGRDVIRTAWYLTALPGLAIVFTVISLNLISDGLNDALNPR 325

Query: 306 LRSHK 310
               +
Sbjct: 326 FSEER 330