Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  115 bits (287), Expect = 2e-30
 Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 5/230 (2%)

Query: 82  ADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTA 141
           A H+LGT   GRDV S++  GAR S+ +GF          T+IG+ +GY  G +D  + A
Sbjct: 47  AGHLLGTDEFGRDVLSRLMVGARASVWIGFLTVSFATICGTLIGLVSGYARGWVDGVIMA 106

Query: 142 AMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREKEFVKA 201
             N +L  P   L   L A  G A    I   +G       ARVVR   ++LRE+EF++A
Sbjct: 107 INNALLAFPGILLALGLLAVFG-ANQYGIIFALGIAYTPSMARVVRGAVLSLREREFIEA 165

Query: 202 AEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGIML 260
           + V+G      +F  ILPN I+ +         +AI+ E+ +SFLGLG  P   +WG ML
Sbjct: 166 SLVMGNGEIYTMFRHILPNCIAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNML 225

Query: 261 YNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLRSHK 310
                    +  A W  L P L + L + G+ LL  A+ +  +P++R  K
Sbjct: 226 ---AAGRPFIQQAVWLGLFPGLCIALTLLGINLLGDALRDRLDPRMRGLK 272