Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 276 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  136 bits (343), Expect = 5e-37
 Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 32/283 (11%)

Query: 17  GVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDGWIAENLATDRRTL 76
           G  IL L  + A+AAPL    +P    G P                             +
Sbjct: 16  GFIILALLVVTALAAPLAFPGDPLAIIGEP----------------------------LI 47

Query: 77  AMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKID 136
           A    A   LGT R+GR+V +++A+GA+ SL VG GA      + TVIG  AG+ GG +D
Sbjct: 48  APFTDAALPLGTDRLGRNVLAELAHGAQASLLVGMGAAAAALVIGTVIGTIAGFAGGLVD 107

Query: 137 DFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREK 196
           + L    +   ++P + L     + IG + P+ I L I   +WA  AR++R+Q +++RE+
Sbjct: 108 EALMRVTDAFQIVPNFLLALAFVSTIGPSMPIVI-LAIALGAWADPARLMRAQVLSIRER 166

Query: 197 EFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLGDPNTISW 256
           ++V++A  +G     I F +ILPN +  V A     V  AI+ EA +SFLGLGDPN ++W
Sbjct: 167 DYVQSARAIGMHPLEIAFRQILPNALPPVLALAAIIVAAAILTEAALSFLGLGDPNIVTW 226

Query: 257 GIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVD 299
           G M   +    ++L  A +  + P + L + V G+ L    ++
Sbjct: 227 GSM---IAEGRNVLRSAAFLSVIPGIGLLVTVLGVYLFGEGIN 266