Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  137 bits (345), Expect = 3e-37
 Identities = 87/207 (42%), Positives = 120/207 (57%), Gaps = 5/207 (2%)

Query: 84  HILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLATVIGVSAGYFGGKIDDFLTAAM 143
           HI GT  +GRD+ +++    R+SL VGF A +    + TVIGV AGY+GG+I   L   +
Sbjct: 74  HIFGTDPLGRDIAARLFNAGRISLLVGFFAMVLSTLIGTVIGVVAGYYGGRIGAILMRFV 133

Query: 144 NIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWGARVVRSQTMALREKEFVKAAE 203
           +  L  P   LL  LAAF+ +  P  I LII  TSW   AR+V ++  +LRE++FV AA 
Sbjct: 134 DAFLSFPSIFLLLALAAFV-KPSPFMITLIIAVTSWMEIARLVEAEVRSLRERDFVMAAR 192

Query: 204 VLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGIMLYN 262
           +LG  +  I+F E+LPN I  +  +   +V  AI++EA ISFLG G  P   SWG ML  
Sbjct: 193 MLGLPNGWIMFRELLPNAIGPIIVAATLTVARAILLEAYISFLGYGIQPPLPSWGNMLNG 252

Query: 263 VQTSSSMLIGAWWELLAPCLSLTLLVT 289
            Q     L  A W  + P +++TL VT
Sbjct: 253 AQ---QYLDKAPWLAIIPGVAITLAVT 276