Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  126 bits (317), Expect = 6e-34
 Identities = 94/294 (31%), Positives = 139/294 (47%), Gaps = 35/294 (11%)

Query: 4   LWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKANPDG 63
           +W     N  A+IG  IL    +LAV AP LT             YP  +          
Sbjct: 20  MWYRFSRNPAAVIGSLILLSVLVLAVFAPWLTP------------YPKHI---------- 57

Query: 64  WIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGA-GITVCFLAT 122
                   D R   M    +H  GT + GRD++S+  +G RVSL +  G  GI+V  + T
Sbjct: 58  ----GAVVDFRARHMPPDLEHWFGTDKAGRDIFSRTIFGLRVSLLLVIGVLGISVP-VGT 112

Query: 123 VIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALI-IGCTSWAW 181
           V+G+ AGYFGG  +  ++   N+ML +P  PL+  LA        LT A+I I    W W
Sbjct: 113 VLGLVAGYFGGWTEKLISGLTNVMLAMP--PLVMALAVSNLLEPTLTNAMIAITLLWWTW 170

Query: 182 GARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEA 241
            AR++ S + ++  +++++AA + G     I+F EILPN +S++         + I+  A
Sbjct: 171 HARLIYSVSKSIASEDYIEAARLAGAGPLHILFREILPNCVSVISVKTTLDAAFVILFGA 230

Query: 242 TISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALL 294
           T+SFLG G  P T   G M   V      +   WWE+L P  ++  +  G  LL
Sbjct: 231 TLSFLGFGVKPPTPDLGSM---VADGRQFMPDFWWEVLCPGAAVLYVTLGFNLL 281