Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  125 bits (315), Expect = 1e-33
 Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 85  ILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCF-LATVIGVSAGYFGGKIDDFLTAAM 143
           +LGT R+GRDV S++ YGAR+SL +G   G+ + F L  VIG  AGY GG  D  +   +
Sbjct: 166 LLGTDRLGRDVLSRIIYGARISLTIGL-LGVAMSFVLGIVIGGLAGYRGGTFDLIVQRII 224

Query: 144 NIMLVIPQYPLLFVLAAFIGEAGP-----LTIALIIGCTSWAWGARVVRSQTMALREKEF 198
            ++  IP  PL   LAA +          L I +I+G   W   AR VRS+ +ALRE+++
Sbjct: 225 EVLQSIPSIPLWLALAAIMPVTWSPILVYLGITIILGMLDWTGLARAVRSKLLALREEDY 284

Query: 199 VKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWG 257
           V +A+++G  + RII   ++P  +S + AS   ++   I+ E  +SFLGLG  P   SWG
Sbjct: 285 VLSAQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGETALSFLGLGLRPPITSWG 344

Query: 258 IMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANP 304
           I+L   ++ S + +  W  LL P + + L++         + + A+P
Sbjct: 345 ILLTEARSVSVIALYPW--LLIPTIPVVLVILAFNFFGDGLRDAADP 389