Pairwise Alignments

Query, 341 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., ABC transporter, membrane spanning protein (dipeptide) from Agrobacterium fabrum C58

 Score =  130 bits (327), Expect = 4e-35
 Identities = 84/304 (27%), Positives = 141/304 (46%), Gaps = 36/304 (11%)

Query: 4   LWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEP-DKRTGNPHEYPAFVVKAAKANPD 62
           +W  L+ N +A+IG+TI+ LF  L++ AP +  ++P  +  GN   +P            
Sbjct: 29  IWLNLKSNPLAVIGLTIIVLFIALSLLAPAIAPYDPATQNLGNRLAFP------------ 76

Query: 63  GWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFLAT 122
                              A+H  GT  +GRD+ S++ YG RV+L +     + V  +  
Sbjct: 77  ------------------NAEHWFGTDELGRDILSRILYGGRVTLGMVIAVVVLVAPIGL 118

Query: 123 VIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWAWG 182
            IG  AGYFGG +D  L    ++ L  P+  L     A + + G  +  L I  T+W   
Sbjct: 119 AIGCIAGYFGGIVDTVLMRVTDVFLAFPRLILALAFVAAL-KPGVESAILAIALTAWPPY 177

Query: 183 ARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEAT 242
           AR+ R++TM +R  +FV A  + G S+WRII   I P  +  +       +   I+  A+
Sbjct: 178 ARLARAETMTVRGSDFVAAYRLTGASAWRIIARHIAPLCVPSLIVRITLDMSSIIITAAS 237

Query: 243 ISFLGLG-DPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEI 301
           + FLG+G  P +  WG M   + T+   +   WW    P +++ L+      L   + ++
Sbjct: 238 LGFLGMGAQPPSPEWGAM---IATAKRFIFEQWWVATIPGIAIFLVSLAFNFLGDGLRDV 294

Query: 302 ANPQ 305
            +P+
Sbjct: 295 LDPK 298