Pairwise Alignments

Query, 327 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  233 bits (595), Expect = 4e-66
 Identities = 129/316 (40%), Positives = 188/316 (59%), Gaps = 15/316 (4%)

Query: 1   MTTP----LISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLM 56
           MT+P    L+ +++L V++ T  G     N V F++  GE   + GESGCGKS  A +L+
Sbjct: 1   MTSPSDSTLLRVQDLHVEFKTRRGQALVLNGVDFEIRAGETLCVVGESGCGKSMTALALL 60

Query: 57  RL-HKPPAFITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFC 115
           RL   PP  I  G+V+F GED+++ SD RM+  R   +SM+FQ  M +LNPV T+ EQ  
Sbjct: 61  RLIPSPPGRIRSGQVLFQGEDLVQASDARMREVRGNRISMIFQEPMTSLNPVFTVGEQIG 120

Query: 116 DVITRHTNMTREQAKRRAEGLLEIVDIHPS--RLNDYPHQFSGGMRQRLVIAIALALNPK 173
           + +  H  +    A  RA  +L  V I     R+++YPHQ SGGMRQR++IA+ALA  P 
Sbjct: 121 ESLRLHAGLNAHAASERAIEMLRQVGIPAPERRVDEYPHQLSGGMRQRVMIAMALACRPD 180

Query: 174 MIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELI 233
           ++I DEPTTALDV VQ +I   +  L+ + G +I+ ITHD+  + E +DR+ +MY+G +I
Sbjct: 181 ILIADEPTTALDVTVQAQIFDLLRELQRDKGTAIMLITHDMGAVAEMADRVMVMYAGRVI 240

Query: 234 EVAPSKQILETPYHPYTKGLGSSFPPL-------TGPKTKLTGIPGNPLNLLDIPQGCRF 286
           E   ++Q+L  P HPYT+GL    P L        G + +L  I G   ++ ++  GC F
Sbjct: 241 EQGTTEQVLSEPGHPYTRGLIDCLPELGSSAAYGDGAREELAEIAGVVPSIWELGTGCAF 300

Query: 287 QARCDRVHEAC-TKVP 301
           + RC R    C T+VP
Sbjct: 301 RERCPRALARCATEVP 316