Pairwise Alignments

Query, 327 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  239 bits (610), Expect = 7e-68
 Identities = 114/295 (38%), Positives = 188/295 (63%), Gaps = 2/295 (0%)

Query: 5   LISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAF 64
           L+ ++NL V++    G +RA ++VSF++APGE+ G+ GESG GKS    S++ L +PP  
Sbjct: 3   LLQVKNLVVEFPGRRGTLRALDDVSFEIAPGEILGVVGESGAGKSLTGASIIGLLEPPGR 62

Query: 65  ITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRHTNM 124
           +  GE++ +G  I     ++M+  R +E+  +FQ  + +LNP+ ++  Q  + IT H  +
Sbjct: 63  VASGEILLHGRRIDNLPHDQMRKVRGREIGAIFQDPLTSLNPLYSVGRQLIETITTHLPV 122

Query: 125 TREQAKRRAEGLLEIVDIHPS--RLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPTT 182
           +  +A+RRA  LL+   I  +  R++ +PHQFSGGMRQR+VIA+ALA  P++I+ DEPTT
Sbjct: 123 SHAEARRRAIDLLKDTGIPAAEQRIDHFPHQFSGGMRQRVVIALALAAEPQLIVADEPTT 182

Query: 183 ALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQIL 242
           ALDV +Q +I+  +  + ++ G +++ ITHD+ ++ E  DR+ +MY+G + E+ P  Q++
Sbjct: 183 ALDVSIQAQIITLLKTICKQRGAAVMLITHDMGVIAETCDRVAVMYAGRVAEIGPVHQVI 242

Query: 243 ETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEAC 297
             P HPYT GL +  P ++  + +L  I G    L  IP GC +  RC++V + C
Sbjct: 243 NHPAHPYTAGLMACIPDMSQDRERLHQIDGAMPRLNAIPPGCAYNPRCEKVFDRC 297