Pairwise Alignments

Query, 327 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  243 bits (620), Expect = 5e-69
 Identities = 127/313 (40%), Positives = 185/313 (59%), Gaps = 4/313 (1%)

Query: 5   LISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAF 64
           L+ + +L V + T  GDV A N+++F L  GE  G+ GESG GKS  AF+LM L      
Sbjct: 17  LLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLATNGR 76

Query: 65  ITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRHTNM 124
           I GG   FNG +IL   +  +   R +++SM+FQ  M +LNP + + EQ  +V+  H  M
Sbjct: 77  I-GGSATFNGREILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGM 135

Query: 125 TREQAKRRAEGLLEIVDIHPSR--LNDYPHQFSGGMRQRLVIAIALALNPKMIIMDEPTT 182
           ++ +A   +  +L+ V +  +R  +  YPH+FSGGMRQR++IA+AL   PK++I DEPTT
Sbjct: 136 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTT 195

Query: 183 ALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQIL 242
           ALDV VQ +I+  +  LK EF  +I+ ITHDL ++    D++ +MY+G  +E   ++ + 
Sbjct: 196 ALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVF 255

Query: 243 ETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPT 302
             P HPY+ GL ++ P L     ++  IPGNP NLL +P+GC FQ RC    E C   P 
Sbjct: 256 YQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPP 315

Query: 303 VLRQIEHGRFSNC 315
            L     GR   C
Sbjct: 316 -LEAFSPGRLRAC 327