Pairwise Alignments

Query, 327 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  230 bits (586), Expect = 8e-65
 Identities = 116/261 (44%), Positives = 167/261 (63%), Gaps = 2/261 (0%)

Query: 2   TTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKP 61
           T P++S+RNL   ++ D        +VSFD+  GE   + GESG GKS  + SLMRL  P
Sbjct: 3   TKPVLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAP 62

Query: 62  PAFITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVITRH 121
            +    GEV+ NG ++L  S+  M+  R  ++SM+FQ  M +LNP+ T+  Q  +V+ RH
Sbjct: 63  ASSHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRH 122

Query: 122 TNMTREQAKRRAEGLLEIVDIH--PSRLNDYPHQFSGGMRQRLVIAIALALNPKMIIMDE 179
             +++++A+     LLE V I    SR ++YPHQFSGGMRQR++IA+ALA  PK++I DE
Sbjct: 123 KGLSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADE 182

Query: 180 PTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSK 239
           PTTALDV +Q +IL  I  L+EE G S+LFITHD+ ++ E +DR  +MY G+ +E   ++
Sbjct: 183 PTTALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATE 242

Query: 240 QILETPYHPYTKGLGSSFPPL 260
            I     HPYT+ L S+ P L
Sbjct: 243 DIFRRGQHPYTRALLSAVPKL 263



 Score =  194 bits (492), Expect = 6e-54
 Identities = 100/263 (38%), Positives = 155/263 (58%), Gaps = 12/263 (4%)

Query: 3   TPLISIRNLCVDY-------ITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSL 55
           TP++S++NL   +           G V A  NVSFDL  GE   L GESGCGKST   S+
Sbjct: 300 TPVLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSI 359

Query: 56  MRLHKPPAFITGGEVIFNGEDILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFC 115
           MRL +P    + G+V  +G D+++     ++  R K + M+FQ   ++LNP +T+     
Sbjct: 360 MRLVEP----SSGDVSLDGYDVMRLDTVGLRNMR-KSVQMIFQDPFSSLNPRMTVGTAIS 414

Query: 116 DVITRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQRLVIAIALALNPKMI 175
           +   +H   + +QAK +   LLE V +     N YPH+FSGG RQR+ IA ALAL+PK+I
Sbjct: 415 EPFIKHRLGSTKQAKEKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVI 474

Query: 176 IMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEV 235
           + DE  +ALDV ++ ++   +  L++    + LFI+HD++++   S R+ +MY GE++E+
Sbjct: 475 VADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 534

Query: 236 APSKQILETPYHPYTKGLGSSFP 258
            P   + + P HPYTK L ++ P
Sbjct: 535 GPRAAVFDNPQHPYTKKLMAAVP 557