Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Oligopeptide ABC transporter, ATP-binding protein OppD (TC 3.A.1.5.1) from Variovorax sp. SCN45

 Score =  194 bits (492), Expect = 3e-54
 Identities = 114/331 (34%), Positives = 182/331 (54%), Gaps = 15/331 (4%)

Query: 6   GELLVEGKNLVKDFAINSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIA 65
           GE L+E  NL   F   +      ++R+++ VS+ +   R L VVGESG GKS TA  I 
Sbjct: 13  GEPLLEVDNLRTHFHTLAG-----VVRSVDGVSYTVRAGRTLGVVGESGCGKSVTALSIL 67

Query: 66  KMYAPTS-----GVIEYKGRDIQDIVSRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIA 120
           ++  PT      G +  +G D+  +  R+        + M++Q+P  SLNP  T+   IA
Sbjct: 68  RL-VPTPPGRHMGAVRLRGTDLMQLSEREMRQIRGNRISMIFQEPMTSLNPVLTVGRQIA 126

Query: 121 RPLLIHKKVTPGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAV 180
             + +H+K +   + +  +R  E+L  V +  P+    +YPHQLSGG RQRV +A  +A 
Sbjct: 127 ETVQLHQKAS---RADALKRAVEMLRVVQIPEPERRVNEYPHQLSGGMRQRVMIALALAC 183

Query: 181 GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVG 240
             EV++ADEPT+ LDV+I+A +L+L++ ++ E  M ++ ITHD+       + + VMY G
Sbjct: 184 NPEVLIADEPTTALDVTIQAQILDLIKRLQKELGMGVVMITHDLGVVAESCDRVVVMYAG 243

Query: 241 HMVEWGDTDEIIHDPQHPYTKLLVSAVPDPKKSIHEKLEGNKGEIPLWTPNSVGCPFAGR 300
             VE  D  ++   P HPYT+ L++++P    +   +L    G +P       GC FA R
Sbjct: 244 RKVEEADVIDLFDRPLHPYTRALMASMP-AMNTASTRLTEIPGLVPAAHELGRGCAFAAR 302

Query: 301 CLYASAKCREALPEVTQLSDNHFVRCYLFEK 331
           C +A A+CR   P++T+   +H V C+  E+
Sbjct: 303 CSHARARCRAEAPQLTRQGGDHVVACFAVEE 333