Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  197 bits (501), Expect = 5e-55
 Identities = 106/244 (43%), Positives = 161/244 (65%), Gaps = 9/244 (3%)

Query: 31  MRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTSGVIEYKGRD--IQDI--V 86
           M+A++ VS K+     L +VGESGSGK+T  + I ++Y PT+G + Y+  D  + D+  +
Sbjct: 304 MKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRADGSVVDLSKI 363

Query: 87  SRDDLMHYREGVQMVWQDPFGSLNPTHTIFHHIARPLLIHKKVTPGNKKELEERVYELLE 146
              +L   R  ++MV+QDPFGSLNP  T+   I  PLL++  +  G  KELEERV  L+E
Sbjct: 364 EGKELKAARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVNG-IAKG--KELEERVCSLME 420

Query: 147 QVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLM 206
           QVGL P  +   +YPH  SGGQRQR+ +AR I +   +++ADE TS LDVS+R  VL+L+
Sbjct: 421 QVGLDP--SGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQVLDLL 478

Query: 207 EEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHMVEWGDTDEIIHDPQHPYTKLLVSA 266
            +++ E  ++ ++I+HDI   RY+ + + VMY G +VE G+ +++ + P HPYT+ L+SA
Sbjct: 479 MKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKVCNAPDHPYTQALLSA 538

Query: 267 VPDP 270
           +P P
Sbjct: 539 IPRP 542



 Score =  164 bits (414), Expect = 6e-45
 Identities = 95/270 (35%), Positives = 155/270 (57%), Gaps = 19/270 (7%)

Query: 9   LVEGKNLVKDFAINSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKM- 67
           L+E +NLV +F + +      + RA+ND+SF +   + L VVGESGSGKS TA+ I ++ 
Sbjct: 7   LLEVRNLVTEFPLRTG-----VFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQII 61

Query: 68  ----YAPTSGVIEYKGR----DIQDIVSRDDLMHYREG--VQMVWQDPFGSLNPTHTIFH 117
               Y  +  +I  K      D+  +  R   +    G  + M++Q+P  SL+P HT+  
Sbjct: 62  DSPGYITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGD 121

Query: 118 HIARPLLIHKKVTPGNKKELEERVYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARN 177
            I   L +H K++   K +      ELL QV +  P+    +Y  Q SGG RQR  +A  
Sbjct: 122 QITEVLRLHLKMS---KAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMA 178

Query: 178 IAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVM 237
           +A   ++++ADEPT+ LDV+ +A +L+L+  ++    M++L+ITHD+     IA+D+ VM
Sbjct: 179 LACKPQLLIADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVM 238

Query: 238 YVGHMVEWGDTDEIIHDPQHPYTKLLVSAV 267
           + G + E+G  ++I H PQ PYT++L+ +V
Sbjct: 239 HHGVVKEYGTVEQIFHKPQDPYTRMLIGSV 268