Pairwise Alignments

Query, 409 a.a., ammonium transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ammonia channel protein from Pseudomonas simiae WCS417

 Score =  165 bits (417), Expect = 3e-45
 Identities = 126/412 (30%), Positives = 190/412 (46%), Gaps = 44/412 (10%)

Query: 15  DTFFFLISGALVMWMAA-GFAMLEAGLVRSKNTTEILTKNFVLYAIACTTYLIVGYNIMY 73
           DT + L + ALV++M   G A+   G+VRSKN   ++ + F +  +    +++ GY+I +
Sbjct: 36  DTAWMLTATALVLFMTIPGLALFYGGMVRSKNILSVMMQCFAITGLISILWVVYGYSIAF 95

Query: 74  VDNTEGGWLPSFGALIGSQADG-------------ADHSLESDFF-FQVVFVATAMSVVS 119
                   + +F +  G                  A    E+ F  FQ+ F     +++ 
Sbjct: 96  DTTGMEQGVVNFNSFFGGMGKAFLAGVTPASITGPAALFPEAVFITFQMTFAIITPALIV 155

Query: 120 GAVAERMKLWAFLIFSAVLTAFIYPVEGYWTWGG--GFLSAAGFSDFAGSGIVHLAGASA 177
           GA AERMK  A LIF A+    +Y    +  W G  G +   G  DFAG  +VH+    A
Sbjct: 156 GAFAERMKFSAMLIFMAIWFTLVYAPIAHMVWSGNGGLMWDWGVLDFAGGTVVHINAGVA 215

Query: 178 ALAGVLLLGARKGKYGKNGEIYPIPGSNMPLATLGTFILWFGWFGFNGGSQLMVSDFENA 237
            L   ++LG RKG         P+   N+    +G  +LW GWFGFN GS    +     
Sbjct: 216 GLVACIVLGKRKGF-----PTTPMAPHNLGYTLIGAAMLWIGWFGFNAGSAAAANG---- 266

Query: 238 TSVGKIFLNTNAAAAAGAIAALLVCKTTWGKADLTMVLNGALAGLVAITADPLSPSPLYS 297
            + G   L T  A AA A+  +     T GK     + +G +AGLVAIT    +  P+ +
Sbjct: 267 -TAGMAMLVTQIATAAAALGWMFAEWITHGKPSALGIASGVVAGLVAITPAAGTVGPMGA 325

Query: 298 VAIGAVSGSLVVFSIIGLD-KLKIDDPVGAISVHGVCGFFGLMVVPLSNADATFG----- 351
           + IG V+G +  F    L  KL  DD + A  VHG+ G  G ++  +  A A  G     
Sbjct: 326 LVIGLVAGVICFFCATSLKRKLGYDDSLDAFGVHGIGGIVGAILTGVFAAPALGGFGTVT 385

Query: 352 ---AQL------LGAAVIFAWVFGASLVVWGVLKATMGIRVSEEEEMEGMDM 394
              AQ+      +G  VI+  +   + V+  VL   MG+RV+EEEE  G+D+
Sbjct: 386 DVAAQVWIQCKGVGFTVIYTAI--VTYVILKVLDMVMGLRVTEEEEAVGLDL 435