Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 765 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

 Score =  161 bits (408), Expect = 1e-43
 Identities = 159/572 (27%), Positives = 259/572 (45%), Gaps = 71/572 (12%)

Query: 168 LMGMLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGR 227
           L+ M   D  + RL+L  ++    LV+ALL+ EDR+FY H G++P A+ RA +     G+
Sbjct: 47  LLRMTLADDGQYRLWLPLERISPSLVEALLLKEDRNFYWHPGINPPALVRAAMATYSGGQ 106

Query: 228 TVQGGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSG 287
             QGGSTL+ QLA+ ++  + R +  KL++  +AL ++ RYSK  ILEAYLN   +G + 
Sbjct: 107 R-QGGSTLSMQLARRLWDLNTRQVPGKLQQMALALWLEARYSKHDILEAYLNLAPMGGN- 164

Query: 288 ADAIHGFGLASRLYFGQPLQELRIDQLALLVGMVKGP---SYYNPMRYAERARERRDLVL 344
              I G   ASR+YFG+   +L + +   L  + + P   + + P    + AR+R     
Sbjct: 165 ---IEGAEAASRIYFGKSAAQLSLSEALALAVIPQQPGRRARFGPS--LQHARQRLMADW 219

Query: 345 KLMMEHDILTAPEYQQAVTRPLDVQKTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLR 404
           +     D    P     +  PL+ +   QI    P   +Q+             +  G  
Sbjct: 220 RETYPQD----PRNDSLLDLPLEARNRQQIPFLAPHLSEQL-----------LASQPGNE 264

Query: 405 VFTSLDPVSQSKLEQAIHDQIPQLAKTAGKDLEAAAIAVDRHSGEIRAMVGGK---RTGY 461
           + ++L+   Q  LE+ I   I +   T  ++  A AI +D     ++A+VG      T  
Sbjct: 265 LNSTLNLPLQHLLERLISGFIAERRSTGVEN--ATAILIDSRDQSVKALVGSADYLSTRL 322

Query: 462 DGFNRVLNASRQIGSLVKPAVYLTAL----AHPDQYNLATTLEDKPLTLKGSEGSAWTPR 517
            G    + + R  GS +KP +Y  AL     HP      + L+D P     S    + P 
Sbjct: 323 HGQVNGVLSRRSPGSTLKPFLYGLALDQGVIHP-----MSILKDLP-----SNFGYFQPE 372

Query: 518 NYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLGVN--RDEIRPVPSMLL 575
           N+D  + G +    AL +S N+P V L  ++    +   L + G+   RDE     ++ L
Sbjct: 373 NFDGSFVGPLTARDALIRSRNIPAVWLASQVKSPSLYGLLQRAGIKGLRDESHYGLALAL 432

Query: 576 GSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGNVLYESLPRVSQAVDQQAAWLTT 635
           G   +TP ++A++Y  L   G   PL  L+      G          +Q +  QAA++  
Sbjct: 433 GGGEMTPEELARLYVMLAGDGHLRPLRYLQEQPQSTG----------AQLLTPQAAFMVR 482

Query: 636 YAMKQGVQEG--TGRYLNAQFSSAALAGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQ 693
             +++  +     GR+          A KTGT+    D+W  G+ G  V  +W+G  D +
Sbjct: 483 DMLRRNPRPDGLPGRHWRT-------AWKTGTSWGFHDAWSAGLVGPYVLVVWVGNFDGR 535

Query: 694 PT-KLTGASGALRVYAQYLKYRIPEKLQLPWP 724
           P     GA  A  ++     +RI + L L  P
Sbjct: 536 PNPAFIGAKTAAPLF-----FRIADALPLALP 562