Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 844 a.a., penicillin-binding protein 1b (NCBI) from Escherichia coli BW25113

 Score =  718 bits (1853), Expect = 0.0
 Identities = 384/772 (49%), Positives = 506/772 (65%), Gaps = 27/772 (3%)

Query: 1   MTRKSSNRSRGRKARSGKSASSSKLQIWLGRIWSIGWKLALTLAAVLVFIGIYLDSMIKQ 60
           M RK   + +GRK R  +           G +W +  KLA+  A ++   G+YLD  I+ 
Sbjct: 46  MPRKGKGKGKGRKPRGKR-----------GWLWLL-LKLAIVFAVLIAIYGVYLDQKIRS 93

Query: 61  RFEGQLFDLPTVVYARILTLEPGNGLSLQELRNELDVLNYRKVAQPRFPGEYASSSSRIE 120
           R +G+++ LP  VY R++ LEP   +S  E+   L+   YR+V++   PGE+   ++ IE
Sbjct: 94  RIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIE 153

Query: 121 LIRRPFEFADGPEPDRRVMLTFDGSGLNKIESLEQKRELGYLRLEPKLMGMLEKDSPEQR 180
           +IRRPF+F D  E   R  LTFDG  L  I ++E  R+ G+ RL+P+L+ M+   + EQR
Sbjct: 154 MIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQR 213

Query: 181 LFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTVQGGSTLTQQLA 240
           LF+ R  FP++LVD LL TEDR FY+HDG+S  +IGRA++ NL AGRTVQG STLTQQL 
Sbjct: 214 LFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLV 273

Query: 241 KNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGFGLASRL 300
           KN+FLSS+R+ WRK  EAYMALI+D RYSKDRILE Y+NEVYLGQSG + I GF LAS  
Sbjct: 274 KNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLY 333

Query: 301 YFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILTAPEYQQ 360
           YFG+P++EL +DQ ALLVGMVKG S YNP R  + A ERR+LVL+L+ +  I+    Y  
Sbjct: 334 YFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDM 393

Query: 361 AVTRPLDVQKTAQIASRQPAYFQQVSIELKEKLGDKFKADSGLRVFTSLDPVSQSKLEQA 420
              RPL VQ    + S QPA+ Q V  EL+ KLGDK K  SG+++FT+ D V+Q   E+A
Sbjct: 394 LSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKA 453

Query: 421 IHDQIPQLAKTAG-KDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVK 479
             + IP L K     DLE A + VDR SGE+RAMVGG    + G+NR + A R IGSL K
Sbjct: 454 AVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAK 513

Query: 480 PAVYLTALAHPDQYNLATTLEDKPLTLKGSEGSAWTPRNYDRQY--RGEVPLYLALAQSL 537
           PA YLTAL+ P  Y L T + D P+ L+   G  W+P+N DR+Y   G V L  AL +S+
Sbjct: 514 PATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSM 573

Query: 538 NVPTVALGMKLGIDQVSATLGKLGVNRDEIRPVPSMLLGSFSLTPYQVAQMYQTLTNSGK 597
           NVPTV LGM LG+  V+ T  KLGV +D++ PVP+MLLG+ +LTP +VAQ +QT+ + G 
Sbjct: 574 NVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGN 633

Query: 598 KAPLSALRSVLDLEGNVLYESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSA 657
           +APLSALRSV+  +G VLY+S P+  +AV  QAA+LT + M+Q VQ GTGR L A++ + 
Sbjct: 634 RAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNL 693

Query: 658 ALAGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALRVYAQYLKYRIPE 717
            LAGKTGTTN+N D+WF G+DG  VT  W+GRD+NQPTKL GASGA+ +Y +YL  + P 
Sbjct: 694 HLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPT 753

Query: 718 KLQLPWPEGITTFGFAKQ----TQGGLKLDCDNAFKLPIW-DNQQQLKQQCE 764
            L L  PE I   G          GG+++       LP+W  + Q L QQ E
Sbjct: 754 PLNLVPPEDIADMGVDYDGNFVCSGGMRI-------LPVWTSDPQSLCQQSE 798