Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., penicillin binding protein from Agrobacterium fabrum C58

 Score =  168 bits (425), Expect = 1e-45
 Identities = 162/556 (29%), Positives = 248/556 (44%), Gaps = 64/556 (11%)

Query: 153 LEQKRELGY--LRLEPKLMGMLEKDSPEQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGV 210
           LE  RE  +  L  + KL+          RL     +     +  L+  ED+ FY H GV
Sbjct: 25  LEAARERSFEVLDRDGKLLRAFATPDGRWRLKTTAAEVDPQFLRMLVAYEDQRFYDHHGV 84

Query: 211 SPLAIGRAMVVNLKAGRTVQGGSTLTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSK 270
            P A+ R+       GR V G STL+ Q+A+ I   +DR+   K  +A  AL I+ R  K
Sbjct: 85  DPWALLRSAWQLASNGRIVSGASTLSMQVARLIEPRADRSFSAKFLQAARALQIERRLDK 144

Query: 271 DRILEAYLNEVYLGQSGADAIHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPM 330
             IL+ YLN    G +    + G   AS  +FG+    L   + AL+V + + P    P 
Sbjct: 145 AEILDLYLNIAPYGGN----LEGVRAASLAWFGKEPGRLDTAEAALMVALPQLPEKRRPD 200

Query: 331 RYAERARERRDLVLKLMMEHDILTAPEYQQAVTRPLDVQKTAQIASRQPAYFQQVSIELK 390
           R+ E A++ R+ VL+ +    ++   E ++A    + V +        P+Y   +++  +
Sbjct: 201 RFPEAAKQARERVLQRLAVERVVGEGEAERAALAAVPVNR-----RDLPSYAPHMAVAAR 255

Query: 391 EKLGDKFKADSGLRVFTSLDPVSQSKLEQAIHDQIPQLAKTAGKDLEAAAIAVDRHSGEI 450
            K  +  +  S LR+     P+ +     A H      A+  G  +  A +  D  +G+I
Sbjct: 256 AKFQNAGEVRSTLRL-----PIQRELEGVARH-----AAEKLGDKVSVAIVMADAQTGDI 305

Query: 451 RAMVGGK---RTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPD-QYNLATTLEDKPLTL 506
            A VG      T   GF  +  A R  GS +KP +Y   LA  D      T +ED+P   
Sbjct: 306 LAEVGSADYLDTARRGFVEMSRAVRSPGSTLKPFIY--GLAFEDGLVGQETIIEDRP--- 360

Query: 507 KGSEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLGVNRDE 566
             ++ S + PRN+D  Y+G+V +  AL  SLNVP V L     +D VS +   +   R  
Sbjct: 361 --ADFSGYRPRNFDMHYQGDVSIRQALQLSLNVPAVKL-----LDAVSPSALMVRFRRAG 413

Query: 567 IR--------PVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPL-SALRSVLD-LEGNVLY 616
           ++        P  ++ LG   ++   + Q+Y  L  SG    L   +R+V + LEG+ L+
Sbjct: 414 VKLVLPANEAPGLAIALGGAGISLVDLVQLYAGLAGSGDPMRLGDGVRTVPERLEGDRLF 473

Query: 617 ESLPRVSQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAALAGKTGTTNDNRDSWFVG 676
            S   +    D  +  L    MKQ                  +A KTGT+   RD+W VG
Sbjct: 474 -SHAAIWNVTDILSGVLPPLGMKQ----------------RGIAYKTGTSYGYRDAWSVG 516

Query: 677 VDGREVTTIWLGRDDN 692
            DGR V  IW+GR DN
Sbjct: 517 YDGRHVIGIWVGRADN 532