Pairwise Alignments

Query, 777 a.a., penicillin-binding protein 1B from Vibrio cholerae E7946 ATCC 55056

Subject, 815 a.a., penicillin-binding protein 1a from Agrobacterium fabrum C58

 Score =  166 bits (419), Expect = 6e-45
 Identities = 102/263 (38%), Positives = 155/263 (58%), Gaps = 13/263 (4%)

Query: 178 EQRLFLRRDQFPEVLVDALLVTEDRDFYQHDGVSPLAIGRAMVVNLK---AGRTVQGGST 234
           E+RLFL     P+ +  A L  ED++FY H GV    +GRA++VNL+   +GR   G ST
Sbjct: 65  EKRLFLPIQAIPDRVKAAFLSAEDKNFYNHPGVDIWGLGRAILVNLQNLGSGRRPVGAST 124

Query: 235 LTQQLAKNIFLSSDRTLWRKLREAYMALIIDYRYSKDRILEAYLNEVYLGQSGADAIHGF 294
           +TQQ+AKN  L++D+T+ RKL+EA ++  I+  YSKD+ILE YLNE++ G +     +G 
Sbjct: 125 ITQQVAKNFLLTNDQTIDRKLKEAILSFRIEQTYSKDKILELYLNEIFFGLNS----YGI 180

Query: 295 GLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEHDILT 354
             A+  YF + + EL I + A L  + KGP+ Y+P+R  + A ERRD V+  M E+  +T
Sbjct: 181 AGAALTYFNKSVTELTIAETAYLASLPKGPANYHPIRREKAALERRDWVIDRMAENGYIT 240

Query: 355 APEYQQAVTRPLDV---QKTAQIASRQPAYF-QQVSIELKEKLGDKFKADSGLRVFTSLD 410
             +   A  +PL V   +  A IA+    YF ++V  ++ EK G++   + GL V TS D
Sbjct: 241 VADATDAKKQPLGVNLRRGGAHIAASD--YFAEEVRRQIVEKYGEEALLEGGLSVRTSFD 298

Query: 411 PVSQSKLEQAIHDQIPQLAKTAG 433
           P  Q +  +A+ D + Q  +  G
Sbjct: 299 PQIQMEARKALQDGLVQYDERRG 321



 Score =  124 bits (312), Expect = 2e-32
 Identities = 102/361 (28%), Positives = 162/361 (44%), Gaps = 39/361 (10%)

Query: 390 KEKLGDKFKADSGLRVFTSLDPVSQSKLEQAIHD-QIPQLAKTAGKDLEAAAIAVDRHSG 448
           ++  G K  + S + V T+ D V    L  + ++ ++ Q  K  G       + +D H+G
Sbjct: 395 RDASGKKATSKSPVGVVTAGDVVYAQPLSGSGNEYRLRQPPKVQG-----GMVVMDPHTG 449

Query: 449 EIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYNLATTLEDKPLTLKG 508
            + AMVGG       FNR   A RQ GS  KP +Y  AL   + Y  A+ + D P+ +  
Sbjct: 450 RVLAMVGGFSYAQSEFNRSTQAMRQPGSSFKPFIYAAAL--DNGYTPASVILDAPIEVV- 506

Query: 509 SEGSAWTPRNYDRQYRGEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLGVNRDEIR 568
           S G  W P+NY     G   L L + +S N+ TV L   +G++ V+    + G+  D++ 
Sbjct: 507 SGGQVWKPQNYGGGSAGPSTLRLGIEKSRNLMTVRLAQDMGMNLVAEYAERFGIY-DKMP 565

Query: 569 PVPSMLLGSFSLTPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGNVLYESLPRV------ 622
           P+ SM LGS   T  ++   Y  L N GK+   + +  + D  G  ++    R       
Sbjct: 566 PLLSMSLGSGETTVMRMVSAYSVLANGGKQIKPTLIDRIQDRYGKTIFRHEERGCEGCNA 625

Query: 623 ---------------SQAVDQQAAWLTTYAMKQGVQEGTGRYLNAQFSSAALAGKTGTTN 667
                           Q +D   A+ TT  ++  V+ GT            +AGKTGTTN
Sbjct: 626 TSWQNQDEPVIVDNREQVLDPMTAYQTTSMLEGVVKRGTAA--GKIKVDLPVAGKTGTTN 683

Query: 668 DNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALR--VYAQYL----KYRIPEKLQL 721
           D +D+WFVG     V  +++G D   P    G  G+L   ++ +++    K+  P K  +
Sbjct: 684 DEKDAWFVGYTPDMVAGLYIGFDSPAPLGRGGTGGSLSAPIFGEFIADAAKHLEPSKFIV 743

Query: 722 P 722
           P
Sbjct: 744 P 744