Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score =  264 bits (675), Expect = 2e-74
 Identities = 158/468 (33%), Positives = 256/468 (54%), Gaps = 17/468 (3%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+ +    +   I +   +I+    G+GK+T  P    + G G +G I   +PRRLAAR
Sbjct: 87  LPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGKYGLIGHTQPRRLAAR 146

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
           ++A  +A+++  E+G  VGY+VR  +++S  TQ++++T+GI+   +QND  L+  D +I 
Sbjct: 147 SVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAEIQNDRFLNQYDTIII 206

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L    ++    R DLK+++ SAT+D +        A  +E  GR +P
Sbjct: 207 DEAHERSLNIDFILGYLKQLLPR-RPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYP 265

Query: 183 IEIRYQPL------RSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDL- 235
           +E+RY+PL       SD   +  + + +  L     G +L F+ G   I    + LS   
Sbjct: 266 VEVRYRPLAGDDDSESDRDQLEGIFQAVDELCDEGLGDILIFMNGEREIRDTADALSKRN 325

Query: 236 ASEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSA 295
             + EI PLY ++    Q +   P A   R++VLATN+AETSLT+ GI+ V+D G  R +
Sbjct: 326 LRDTEIVPLYARLSAGEQNKIFQPHAG--RRIVLATNVAETSLTVPGIKYVIDPGTARIS 383

Query: 296 RFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTD 355
           R+  +T + RL    I+Q+SA QR GR GR E GIC+RLYSE     +P   +PE+L T+
Sbjct: 384 RYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRLYSEEDFLSRPEFTDPEILRTN 443

Query: 356 LAPLALELAQWGAQPSD-LAWLNLPPSSAFAQAQQLLQRLGLL-----DARTQITAAGKE 409
           LA + L++   G    +   ++  P         +LL+ LG +     D + ++T +GK+
Sbjct: 444 LASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINDQIKDPKKRLTESGKQ 503

Query: 410 AHLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEPERQVIDVQHS 457
              L ++PR+A M+L A +LG       +A  + +++P  +  D Q S
Sbjct: 504 LARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPRERPSDKQQS 551