Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., ATP-dependent helicase HrpB from Sphingobium sp. HT1-2

 Score =  507 bits (1306), Expect = e-148
 Identities = 326/821 (39%), Positives = 458/821 (55%), Gaps = 27/821 (3%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLAARN 63
           LPI  V+P LL+ +      +L A PGAGK+T     LL      G++++L PRRLAAR 
Sbjct: 6   LPIHAVLPDLLAALARGSNAVLVAPPGAGKTTAVAPALLDQPWCEGQVLLLSPRRLAARA 65

Query: 64  IARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIFD 123
            A  +A+ LGE+ G  VGY  R +++VS  T+L ++TEGI  R +Q+DPEL GV  ++FD
Sbjct: 66  AAERIAEMLGEQPGGTVGYATRMDSKVSAKTRLLVLTEGIFVRRIQDDPELAGVSAVLFD 125

Query: 124 EFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFPI 183
           E HERS+ +D  LALAL+ Q+ALR DL+I+ MSATLD      LL  A  +ES+G+  P+
Sbjct: 126 EVHERSLDSDFGLALALDAQAALRPDLRILPMSATLDGARFSTLLDGAPVIESEGKIQPL 185

Query: 184 EIRYQPLRSDEPLVTAMQRQIRHLLQHET-GSLLAFLPGAASINQLTEQLSDLASEVEIC 242
           E+R+    +++ +   M   IR  L+ ET G LLAFLPG   I +  E++   A EV + 
Sbjct: 186 ELRHIGRHAEKRIEDEMAAAIRRALEEETQGDLLAFLPGVREIERTAERIEGGAFEVHM- 244

Query: 243 PLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARFDLKTG 302
            L+G ++ AAQ+ AI P+  GRRKV+LAT+IAETSLTI+G+RIV+DSGL R  R+D   G
Sbjct: 245 -LHGSLDPAAQRAAIRPSREGRRKVILATSIAETSLTIDGVRIVVDSGLARRPRYDRAAG 303

Query: 303 ITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPLALE 362
           +TRL   R +Q+SA QRAGRA R  PG+  RL+  A     P    PE+L +DL+ L L+
Sbjct: 304 VTRLVTERASQASATQRAGRAARQRPGVAYRLWEAAATAGMPPFDPPEILESDLSSLLLD 363

Query: 363 LAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLGVEPRIAA 421
            A WG + P+ L WL+ PP++A A+A + L  L  LDA  +ITA GK    L + PRIA 
Sbjct: 364 CALWGVSDPASLRWLDAPPAAAVAEAAKRLTALEALDADGRITAHGKALATLPLAPRIAH 423

Query: 422 MLLSADRLGESAL-QSALALTVLLEEP--ERQVIDVQHSLHRWQQGRHPKQKLLIQRAQS 478
           ML+   R GE  L ++A  + VLL E     Q  D+     RW++    + +     A+ 
Sbjct: 424 MLV---RAGERGLARTAAEIAVLLGERGLGGQDTDLTLRFQRWRREGGKRAEAGRGLAKR 480

Query: 479 LAHKLDTAFSLSSVDSAWLPLVAC--LAFPDRIAQQRGQQTGQFLLANGHGAWLAVEDRL 536
            A  +D   S SS +     +  C  LAFPDR+A++R      +    G G  L   D L
Sbjct: 481 WARLVD---SRSSAEGGLHDVGLCLALAFPDRVAKRRSADGADWASVGGRGFRL---DPL 534

Query: 537 S--AADYLVALDLMRGQTQASQIFSALELDIHALERVLPALISRVEQVDWDEKAGRLSAE 594
           S  A++  +A+  ++G    ++I SA  +    +  +    I+    V +    G + A 
Sbjct: 535 SPLASETWLAVGEVQGSAAGARILSAAPIGEAEVIALFGERIAEHRTVKFRPANGGIEAL 594

Query: 595 AQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEWLP 654
            + R+  + L       PD   +  ALL  VR+ GL +L WSE A     RA  A     
Sbjct: 595 RERRLGAVRLSSGSDDRPDPDAVAAALLDGVRQGGLALLPWSEAAQSLRMRADFA----- 649

Query: 655 EEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWLPT 714
                AL D  L+  L+ WL P LAG   +  +    +   L+  +GW+  QQLD   P 
Sbjct: 650 --GIEALSDAALIDTLDEWLPPLLAGKRRLSDIDRSQLSGVLETLIGWDGKQQLDRLAPP 707

Query: 715 HHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQVT 774
               P G+   I Y     P + +R+Q +FG    P V      +V+ L SPA RP+Q T
Sbjct: 708 DFRSPAGSTHAIDYAAEGGPRVELRVQALFGLSQHPTVGNQRIPLVLSLTSPAGRPIQTT 767

Query: 775 RDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815
           RDL  FWAG +++V KEM+GRYP+H WPDDPA+  AT +TK
Sbjct: 768 RDLPGFWAGNWRDVAKEMRGRYPRHPWPDDPASANATLRTK 808