Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1292 a.a., macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  226 bits (577), Expect = 5e-63
 Identities = 155/465 (33%), Positives = 247/465 (53%), Gaps = 30/465 (6%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG--------GFHGKII-ML 54
           LP+     ++ + + +   +I+    G+GK+T  P   L  G        G  G++I   
Sbjct: 14  LPVSARRHEIEAAMRDHQVVIVCGETGSGKTTQLPKIALAMGRGKCNAKPGQRGQLIGHT 73

Query: 55  EPRRLAARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPEL 114
           +PRR+AA ++A+ +A++L   +G+ VGY+VR ++R+S+   ++++T+GI+    Q DP+L
Sbjct: 74  QPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLSKDASVKLMTDGILLAETQTDPDL 133

Query: 115 DGVDVLIFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQAS-- 172
              D +I DE HERS++ D  L    ++    R DLK+VV SAT+D          A   
Sbjct: 134 RAYDTIIIDEAHERSLNIDFLLGYLRQLLPR-RPDLKVVVTSATIDADRFARYFASAKGP 192

Query: 173 --YVESQGRGFPIEIRYQPLRS--DEPLVTAMQRQIRHLLQHETGS-LLAFLPGAASINQ 227
              +   GR FP+E+R++P     D  L  A+   +  L +   G  +L FLPG   I +
Sbjct: 193 APVLMVSGRTFPVEVRWRPYEESRDYDLNNAIADAVDELWRGPAGGDILVFLPGEREIRE 252

Query: 228 LTEQLSDLASE------VEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIE 281
             + L    S        E+ PL+ ++  A Q R I    +GRR +VL+TN+AETSLT+ 
Sbjct: 253 AADHLRKHLSHQPVLRSAEVLPLFARLSQAEQDR-IFQDHSGRR-IVLSTNVAETSLTVP 310

Query: 282 GIRIVLDSGLERSARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLK 341
           GIR V+D+G  R  R+  +  + +L    I+Q++A QRAGR GR+  GI +RLY EA   
Sbjct: 311 GIRFVIDAGTARVKRYSFRQKVEQLLVEPISQAAANQRAGRCGRVADGIAIRLYEEAGFG 370

Query: 342 QQPWVPEPEMLHTDLAPLALEL--AQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDA 399
            +P   +PE+L + LA + L +   + GA   D A++  P   A     QLL  L  +D 
Sbjct: 371 ARPAFTDPEILRSSLAGVILRMKALRLGA-VEDFAFIEAPQKRAIVDGYQLLAELNAVDE 429

Query: 400 RTQITAAGKEAHLLGVEPRIAAMLLSADRLG--ESALQSALALTV 442
             ++T  G+    L ++PR+  M+L A + G  +  L  A AL+V
Sbjct: 430 ANELTPIGQTLSRLPLDPRVGRMILEAQQRGALDEVLVIASALSV 474