Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  252 bits (643), Expect = 1e-70
 Identities = 161/483 (33%), Positives = 263/483 (54%), Gaps = 24/483 (4%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+ +    +L  I +   +I+    G+GK+T  P   ++ G G  G I   +PRRLAAR
Sbjct: 77  LPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAAR 136

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
            +A  +A++L  E G  +GY+VR  + VS  T ++++T+GI+   +Q D  L   D LI 
Sbjct: 137 TVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTLII 196

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L    E+    R DLK+++ SAT+D +        A  +E  GR +P
Sbjct: 197 DEAHERSLNIDFLLGYLKELLPR-RPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYP 255

Query: 183 IEIRYQPL-----RSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDL-A 236
           +E+RY+P+      ++   + A+   +  L +   G +L F+ G   I    + L+ L  
Sbjct: 256 VEVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNL 315

Query: 237 SEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSAR 296
              E+ PLY ++  + Q R +  + +GRR +VLATN+AETSLT+ GI+ V+D G  R +R
Sbjct: 316 RHTEVLPLYARLSNSEQNR-VFQSHSGRR-IVLATNVAETSLTVPGIKYVIDPGTARISR 373

Query: 297 FDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDL 356
           +  +T + RL    I+Q+SA QR GR GR+  GIC+RLYSE     +P   +PE+L T+L
Sbjct: 374 YSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNL 433

Query: 357 APLALELAQWGAQPSDLA---WLNLPPSSAFAQAQQLLQRLGLLDARTQ-----ITAAGK 408
           A + L++   G    D+A   ++  P         +LL+ LG + A  Q     +T  G+
Sbjct: 434 ASVILQMTALGL--GDIAAFPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGR 491

Query: 409 EAHLLGVEPRIAAMLLSADRLGESALQSALALT--VLLEEPERQVIDVQHSLHRWQQGRH 466
           +   L V+PR+A M+L A + G   ++ A+ +T  + +++P  + +D Q +     +  H
Sbjct: 492 QLSQLPVDPRLARMVLEAQKHG--CVREAMIITSALSIQDPRERPVDKQQASDEKHRRFH 549

Query: 467 PKQ 469
            K+
Sbjct: 550 DKE 552