Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1299 a.a., ATP-dependent RNA helicase HrpA from Erwinia amylovora T8

 Score =  248 bits (634), Expect = 1e-69
 Identities = 161/465 (34%), Positives = 253/465 (54%), Gaps = 21/465 (4%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+ +   ++ + I  S  +I+    G+GK+T  P   L+ G G  G I   +PRRLAAR
Sbjct: 77  LPVSQKKQEIANAIRTSQVVIVAGETGSGKTTQLPKICLELGRGIRGLIGHTQPRRLAAR 136

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
            +A  +A +L   +G  VGY+VR  + V   TQ++++T+GI+   +Q D  L   D +I 
Sbjct: 137 TVAERIAAELEISLGGCVGYKVRFNDHVGDTTQVKLMTDGILLAEIQQDRLLLQYDTIII 196

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L    E+    R DLK+++ SAT+D Q        A  +E  GR +P
Sbjct: 197 DEAHERSLNIDFILGYLRELLPK-RPDLKVIITSATIDPQRFSRHFHNAPVIEVSGRTYP 255

Query: 183 IEIRYQPL-----RSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQL--SDL 235
           +E+RY+P+      SD   + A+   +  L +   G +L F+ G   I    + L   DL
Sbjct: 256 VEVRYRPVVEEADDSDRDQLQAIFDAVDELGRESRGDILIFMSGEREIRDTADALIKRDL 315

Query: 236 ASEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSA 295
               E+ PLY ++  A Q R +  + AGRR +VLATN+AETSLT+ GI+ V+D G  R +
Sbjct: 316 P-HTEVLPLYARLSNAEQNR-VFQSHAGRR-IVLATNVAETSLTVPGIKYVIDPGTARIS 372

Query: 296 RFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTD 355
           R+  +T + RL    I+Q+SA QR GR GR+  GIC+RLY+E     +P   +PE+L T+
Sbjct: 373 RYSFRTKVQRLPIEAISQASANQRKGRCGRVSEGICIRLYAEDDFLSRPAFTDPEILRTN 432

Query: 356 LAPLALELAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLL----DARTQITAAGKEA 410
           LA + L++   G    S   ++  P         +LL+ LG +    +   ++T +G+  
Sbjct: 433 LASVILQMTALGLGDISAFPFVEAPDRRNIQDGVRLLEELGAITLADNHHYRLTPSGRAL 492

Query: 411 HLLGVEPRIAAMLLSADRLGESALQSALALTVLL--EEPERQVID 453
             L V+PR+A M+L A + G   ++ A+ +T  L  ++P  +  D
Sbjct: 493 AQLPVDPRLAKMVLEAQKFG--CVREAMIITAALSIQDPRERPAD 535