Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1300 a.a., RNA helicase HrpA from Enterobacter asburiae PDN3

 Score =  251 bits (642), Expect = 1e-70
 Identities = 161/484 (33%), Positives = 260/484 (53%), Gaps = 26/484 (5%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAAR 62
           LP+ +    +L  + +   +I+    G+GK+T  P   ++ G G  G I   +PRRLAAR
Sbjct: 77  LPVSQKKQDILEAVRDHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTQPRRLAAR 136

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
            +A  +A++L  E G  +GY+VR  + VS  T ++++T+GI+   +Q D  L   D +I 
Sbjct: 137 TVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIII 196

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DE HERS++ D  L    E+    R DLKI++ SAT+D +        A  +E  GR +P
Sbjct: 197 DEAHERSLNIDFLLGYLKELLPR-RPDLKIIITSATIDPERFSKHFNNAPIIEVSGRTYP 255

Query: 183 IEIRYQPL-----RSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLS--DL 235
           +E+RY+P+      ++   + A+   +  L     G +L F+ G   I    + LS  DL
Sbjct: 256 VEVRYRPIVEEADDTERDQLQAIFDAVDELGNESAGDILIFMSGEREIRDTADALSKRDL 315

Query: 236 ASEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSA 295
               EI PLY ++  + Q R   P   G R++VLATN+AETSLT+ GI+ V+D G  R +
Sbjct: 316 R-HTEILPLYARLSNSEQNRVFQPH--GGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 372

Query: 296 RFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTD 355
           R+  +T + RL    ++Q+SA QR GR GR+  GIC+RLYSE     +P   +PE+L T+
Sbjct: 373 RYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTN 432

Query: 356 LAPLALELAQWGAQPSDLA---WLNLPPSSAFAQAQQLLQRLGLLDARTQ-----ITAAG 407
           LA + L++   G    D+A   ++  P         +LL+ LG +    Q     +T  G
Sbjct: 433 LASVILQMTALGL--GDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQATVYKLTPLG 490

Query: 408 KEAHLLGVEPRIAAMLLSADRLGESALQSALALT--VLLEEPERQVIDVQHSLHRWQQGR 465
           ++   L V+PR+A M+L A + G   ++ A+ +T  + +++P  + +D Q +     +  
Sbjct: 491 RQLSQLPVDPRLARMVLEAQKHG--CVREAMIITSALSIQDPRERPMDKQQASDEKHRRF 548

Query: 466 HPKQ 469
           H K+
Sbjct: 549 HDKE 552