Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 809 a.a., ATP-dependent helicase HrpB from Escherichia coli ECRC62

 Score =  738 bits (1905), Expect = 0.0
 Identities = 400/824 (48%), Positives = 555/824 (67%), Gaps = 25/824 (3%)

Query: 1   MSPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLA 60
           +S LP+  V+ +LL+ +  +PQ++L A  GAGKST+ PLQLL   G  GKII+LEPRRLA
Sbjct: 1   VSSLPVAAVLSELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIKGKIILLEPRRLA 60

Query: 61  ARNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVL 120
           ARN+A+ LA+ L E+ G  VGYR+R +N V   T+LE+VTEG++TRM+Q DPEL GV ++
Sbjct: 61  ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120

Query: 121 IFDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRG 180
           I DEFHERS+ AD ALAL L+VQ  LR+DLK+++MSATLD   LQ +LP+A  V S+GR 
Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180

Query: 181 FPIEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQL-SDLASEV 239
           FP+E RY PL + +    A+      +L+ E+GSLL FLPG   I ++ EQL S + S+V
Sbjct: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240

Query: 240 EICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARFDL 299
            +CPLYG +    Q++AI P   G RKVVLATNIAETSLTIEGIR+V+D   ER ARFD 
Sbjct: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300

Query: 300 KTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPL 359
           +TG+TRL   R++Q+S  QRAGRAGRLEPGIC+ L ++ Q ++     EPE+L +DL+ L
Sbjct: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSDLSGL 360

Query: 360 ALELAQWG-AQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLGVEPR 418
            +EL QWG + P+ ++WL+ PP      A++LLQ LG L+   +++A G++   LG +PR
Sbjct: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419

Query: 419 IAAMLLSADRLGESALQSALALTVLLEEPERQV-----IDVQHSLHRWQQGRHPKQKLLI 473
           +AAML+SA    E+A  +A  +  +LEEP R       +    +   WQQ          
Sbjct: 420 LAAMLVSAKNDDEAA--TAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ---------- 467

Query: 474 QRAQSLAHKLDTAFSLSSVDSAWLPLVACLAFPDRIAQQRGQQTGQFLLANGHGAWLAVE 533
            R+Q L  +L+        DS+ +  +   AF DRIA++RGQ  G++ LANG GA L   
Sbjct: 468 -RSQQLLKRLNVRGG--EADSSLIAPLLAGAFADRIARRRGQD-GRYQLANGMGAMLDAN 523

Query: 534 DRLSAADYLVALDLMRGQTQA-SQIFSALELDIHALERVLPALISRVEQVDWDEKAGRLS 592
           D LS  ++L+A  L++G     ++I  AL +DI  L +  P L+ + + V+WD+  G L 
Sbjct: 524 DALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583

Query: 593 AEAQWRIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEW 652
           A  + +I QL ++ + L +P + ++ QA+L+ +R KGL+VL W+ +A +   R  CAA+W
Sbjct: 584 AWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKW 643

Query: 653 LPEEAWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWL 712
           LPE  WPA+DDE+LLA LE WL P++ GV S++GL+S+ + QAL+  L W + Q+LD  L
Sbjct: 644 LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL 703

Query: 713 PTHHLLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQ 772
           P H+ +PTG+   IRY     P L+VRMQE+FGE ++P +A+G   +V+ELLSPAQRPLQ
Sbjct: 704 PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763

Query: 773 VTRDLASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKR 816
           +TRDL +FW GAY+EVQKEMKGRYPKHVWPDDPAN   T +TK+
Sbjct: 764 ITRDLGAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807