Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 1331 a.a., ATP-dependent RNA helicase HrpB from Alteromonas macleodii MIT1002

 Score =  251 bits (642), Expect = 1e-70
 Identities = 161/480 (33%), Positives = 263/480 (54%), Gaps = 30/480 (6%)

Query: 3   PLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAG-GFHGKIIMLEPRRLAA 61
           PLP+ +    +   I N+  +I+    G+GK+T  P   L+ G G +G I   +PRRLAA
Sbjct: 100 PLPVSDKKEDIKEAIANNQVVIVAGETGSGKTTQLPKICLELGRGVNGMIAHTQPRRLAA 159

Query: 62  RNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLI 121
           R++A  +A++L   +G++VG+++R  ++VS  + ++++T+G++   +Q D  L+  D +I
Sbjct: 160 RSVATRIAEELNTPLGEKVGFKIRFSDQVSERSYVKLMTDGMLLAEMQQDRFLNQYDTII 219

Query: 122 FDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGF 181
            DE HERS++ D  L    ++    R DLK+++ SAT+D +        A  +E  GR +
Sbjct: 220 IDEAHERSLNIDFLLGYLRQLLDK-RPDLKLIITSATIDPERFSKHFNNAPIIEVSGRTY 278

Query: 182 PIEIRYQ-PLRSDEPL--VTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA-S 237
           P+EIRY  P  +D+ +    A+   +  L++   G +L FL G   I    + LS     
Sbjct: 279 PVEIRYHAPEDNDDDIDQSDAIVNAVDELMREAPGDILVFLSGEREIRDTQDALSKQHYR 338

Query: 238 EVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARF 297
             EI PLY ++  AA+Q  I  + +GRR +VLATN+AETSLT+ GI+ V+D G  R +R+
Sbjct: 339 NTEIVPLYARLS-AAEQNRIFQSHSGRR-IVLATNVAETSLTVPGIKYVIDPGFARISRY 396

Query: 298 DLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLA 357
             ++ + RL    I+Q+SA QRAGR GR+  GIC+RLYSE     +P   +PE+L T+LA
Sbjct: 397 SARSKVQRLPIEPISQASANQRAGRCGRVSDGICIRLYSEDDYLGRPEFTDPEILRTNLA 456

Query: 358 PLALELAQWG---------AQPSDLAWLN-----LPPSSAFAQAQQLLQRLGLLDARTQI 403
            + L++   G          QP D   +N     L    A A+ +    R      + Q+
Sbjct: 457 SVILQMLALGLGDIAAFPFVQPPDNRNINDGFRLLEEIQAIAKGKD--NRKTKQSGKMQL 514

Query: 404 TAAGKEAHLLGVEPRIAAMLLSADRLGESALQSALALTVLLEEP------ERQVIDVQHS 457
           T  G++   L ++PR A M++ A+R    +    +A  + +++P      +RQ  D +HS
Sbjct: 515 TPLGRQVARLPIDPRYARMVIEAERTNALSEVMVIAAGLSIQDPRERPQEKRQQADEKHS 574