Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 880 a.a., ATP-dependent RNA helicase HrpB from Alteromonas macleodii MIT1002

 Score =  474 bits (1221), Expect = e-138
 Identities = 323/882 (36%), Positives = 461/882 (52%), Gaps = 72/882 (8%)

Query: 2   SPLPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGFHGKIIMLEPRRLAA 61
           S LP  E++  L   +  S  +I+ A PGAGKST  PL LL++    GKI++++PRR+  
Sbjct: 6   SHLPAYELVTPLEEAVAAS-NVIIGAPPGAGKSTVLPLSLLKSS-LKGKILLMQPRRVVV 63

Query: 62  RNIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLI 121
           RN+A YLA+QL E VG+ VGYR++GE++ S AT+LEI+TEG++TRM+Q DPELDGV  ++
Sbjct: 64  RNLADYLARQLNENVGETVGYRIKGESKTSSATRLEIITEGVLTRMIQQDPELDGVAAIV 123

Query: 122 FDEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASY-----VES 176
           FDEFHERSIH+D  LALALEVQS LR+DL++VVMSATLD   LQ LL   S      + +
Sbjct: 124 FDEFHERSIHSDFGLALALEVQSGLRDDLRLVVMSATLDVAPLQTLLNAHSVLPVVNLNT 183

Query: 177 QGRGFPIEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSDLA 236
           QGR F ++IRY        LV      I+  +    G +L FLPG  SIN + +++  LA
Sbjct: 184 QGRMFAVDIRYTQDVQAHELVPKTCNIIKQAVGEHDGDILVFLPGRGSINAVAKEIKGLA 243

Query: 237 --SEVEICPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERS 294
             +++ +  LYG +  + QQ AI P   GRRK++L+TNIAETSLTIEG+ +V+DS  E S
Sbjct: 244 ESADMAVHMLYGALSKSVQQAAITPDPQGRRKIILSTNIAETSLTIEGVTVVIDSLWENS 303

Query: 295 ARFDLKTGITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHT 354
           A++   + IT L Q RI+Q+SA QRAGRAGR+  G C RL S++  ++       ++   
Sbjct: 304 AQYHPSSDITALTQQRISQASAIQRAGRAGRVMAGTCYRLCSKSSFERLAKYNAAQIEKE 363

Query: 355 DLAPLALELAQWGAQPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLG 414
           DL+   L+   WG+ P  LA L  P  +    AQQ LQR+  + +++ IT  G+    L 
Sbjct: 364 DLSSFLLDTLAWGSSPDTLALLTKPTQAQQQVAQQKLQRVNAI-SQSSITPYGRALAQLP 422

Query: 415 VEPRIAAMLLSA----DRL---GESALQSALALTVLLEEPERQVIDVQHSLHRWQQGRHP 467
            +P +A +LL+     D L      AL+ A    V L E    V    + +         
Sbjct: 423 CQPHLAHLLLTVKQGIDGLCADDNDALRHAAPFVVALSESNISVGGATNVMDALLHANSN 482

Query: 468 KQKLLIQRAQSLAHKLDT--------AFSLSSVDSAWLPLVACLAFPDRIAQQRG----- 514
            +  L Q+A   A  +             ++ +D   L L   +AFP ++  +R      
Sbjct: 483 TRSQLTQQATRYARYVRNNDGKAQRFKPDINELDEQALGLCIAIAFPLQVGYRRSASDKS 542

Query: 515 ----------QQTG--QFLLANGHGAWLAV--------EDRLSAADYLVALDLMRGQTQA 554
                      +TG  ++ LA+G GA L          E       +L  LD   GQ   
Sbjct: 543 AESSNTTNGKPKTGIVEYKLASGKGAELTAAGSASIFNESENGDGPWLAVLD---GQLIK 599

Query: 555 SQIFSALELDIHA--LERVLPALISRVEQVDWDEKAGRLSAEAQWRIDQLVLRREKLPEP 612
           S +   L   +    L    P        V  +   G + A       ++ L    +   
Sbjct: 600 STVAIRLAQSVPESWLRLAFPDAFKEKRSVILNSHTGVMEARVSTGFYEITLNSTPVSGQ 659

Query: 613 DKQK--------MTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEW-LPE-------E 656
           +K +        +  A  +Y+    L+    S+   +W  R   A +  LP+       +
Sbjct: 660 EKSREKAFWDDALCNAWFAYLDALPLSSWPLSDADWQWWRRVAMAGKLNLPQDKAFDEPD 719

Query: 657 AWPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWLPTHH 716
            WP L    L+ + +  L P L    ++K L+ +    AL + L W     L   LPTH 
Sbjct: 720 PWP-LSLSALVHQAKDSLAPVLKNCKNIKNLKQLPWKTALNNGLSWPQQDALATLLPTHV 778

Query: 717 LLPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQVTRD 776
            +PTG    + Y+   +  LSV+M E++ + +   +A G   VV ELLSPA RPLQ T D
Sbjct: 779 TIPTGREASLDYRDNGDVVLSVKMPELYSQGTPLTIAGGRITVVCELLSPAGRPLQTTSD 838

Query: 777 LASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTKRQL 818
           LA+FW G+YKE+QKEMKGRYPKH WPDDPAN   TSKTK+ +
Sbjct: 839 LAAFWHGSYKEIQKEMKGRYPKHFWPDDPANASPTSKTKKHM 880