Pairwise Alignments

Query, 820 a.a., ATP-dependent helicase HrpB from Vibrio cholerae E7946 ATCC 55056

Subject, 828 a.a., helicase from Agrobacterium fabrum C58

 Score =  582 bits (1501), Expect = e-170
 Identities = 338/818 (41%), Positives = 499/818 (61%), Gaps = 14/818 (1%)

Query: 4   LPIIEVMPKLLSGITNSPQLILKAAPGAGKSTYFPLQLLQAGGF-HGKIIMLEPRRLAAR 62
           LP+  V+  +   +    + +L A PGAGK+T  PL+LL       GKII+LEPRRLAAR
Sbjct: 15  LPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGDGKIILLEPRRLAAR 74

Query: 63  NIARYLAQQLGEEVGQRVGYRVRGENRVSRATQLEIVTEGIMTRMLQNDPELDGVDVLIF 122
             A  +A+ L E VG+ VGYR+R +NRVS  T++E+VTEG+  RM+ +DPEL GV  +IF
Sbjct: 75  AAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPELSGVSTVIF 134

Query: 123 DEFHERSIHADTALALALEVQSALREDLKIVVMSATLDQQALQNLLPQASYVESQGRGFP 182
           DEFHERS+  D  LALAL+VQ+ LREDL+I+VMSATLD + +  L+  A  ++S GR FP
Sbjct: 135 DEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALMGDAPVIQSLGRTFP 194

Query: 183 IEIRYQPLRSDEPLVTAMQRQIRHLLQHETGSLLAFLPGAASINQLTEQLSD-LASEVEI 241
           I+IRY+       +   + + I      ETGS+LAFLPG A I +   +L      + +I
Sbjct: 195 IDIRYEERWQGIHVDEKVAKAITEAHASETGSILAFLPGQAEITRTASRLEGRFPDDTDI 254

Query: 242 CPLYGQMEFAAQQRAIAPTAAGRRKVVLATNIAETSLTIEGIRIVLDSGLERSARFDLKT 301
            PLYG +    Q  AI P   GRRK+VLAT+IAETS+TI+G+R+V+DSGL+R   F+  T
Sbjct: 255 IPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVIDSGLQRLPVFEPAT 314

Query: 302 GITRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEAQLKQQPWVPEPEMLHTDLAPLAL 361
           GITRLE VR++++SA+QRAGRAGR EPGI +RL+ + Q         P++L +DL+ LAL
Sbjct: 315 GITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALNAFTPPQILASDLSGLAL 374

Query: 362 ELAQWGA-QPSDLAWLNLPPSSAFAQAQQLLQRLGLLDARTQITAAGKEAHLLGVEPRIA 420
           +LA WG   PS LA+L+ PP +A  ++  LL+ LG LD    +T  G     L + PR+A
Sbjct: 375 DLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGALDNSGGLTRQGHLMRGLSLPPRLA 434

Query: 421 AMLLSADRLGESALQSALALTVLLEEPERQVIDVQHSLHRWQQGRHPKQKLLIQRAQSLA 480
           AM++++   G     + LA+ +  +      ID+   L R+   R  +     Q A+ LA
Sbjct: 435 AMVIASAEEGAGKKAAMLAVMLTEQGLGGNDIDLDERLRRFFSERSER----AQAARKLA 490

Query: 481 HKLDTAFSLSSVDSAWLPLVACL---AFPDRIAQQRGQQTGQFLLANGHGAWLAVEDRLS 537
            +L  A    +  +     V  L   A+PDRIA QRG + G++++ANG GA LA  +RL+
Sbjct: 491 SRLLDAIGDKTAKAETPSEVGALLLHAYPDRIALQRGAR-GRYVMANGRGAELAETERLA 549

Query: 538 AADYLVALDLMRGQTQASQIFSALELDIHALERVLPALISRVEQVDWDEKAGRLSAEAQW 597
           A+  LV  D+  G+    ++ +A  ++   +E  +P LI + EQ+ +D+ +G+  A    
Sbjct: 550 ASKMLVVADI-TGRAAQPRVLAAAAIERADIEERMPHLIVQQEQLLFDKASGQARARKVT 608

Query: 598 RIDQLVLRREKLPEPDKQKMTQALLSYVRRKGLTVLQWSEDASEWLARARCAAEWLPEEA 657
           R+  ++L    LP PD ++  +AL + VR  GL +L +S++  +   R       +  + 
Sbjct: 609 RLGAIILDETPLPRPDGEQAARALANGVREFGLDILPFSKETLQLRDRIGFLNASI-GDP 667

Query: 658 WPALDDETLLARLELWLEPYLAGVTSVKGLQSVSVLQALKHYLGWELSQQLDEWLPTHHL 717
           WP + D  LLARLE W  P+  G  S++ ++  S+ + +   +  E+++ L    PTH  
Sbjct: 668 WPDVSDAALLARLEEWFVPFQNGARSLQDIRPGSLSEGILSLVPHEVARDLGRLAPTHFE 727

Query: 718 LPTGNHKKIRYQLGMEPTLSVRMQEVFGEQSSPRVAKGTRAVVMELLSPAQRPLQVTRDL 777
            PTG    IRY    EPTLS+R+QE+FG ++ P +A+G   +++EL SPA RP+Q TRDL
Sbjct: 728 APTGQRHPIRYD-ASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPIQTTRDL 786

Query: 778 ASFWAGAYKEVQKEMKGRYPKHVWPDDPANHVATSKTK 815
             FW G++K+V+ +M+GRYP+H WP+DPA+ + TS+ K
Sbjct: 787 PGFWTGSWKDVRADMRGRYPRHPWPEDPASALPTSRAK 824