Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  327 bits (839), Expect = 1e-94
 Identities = 159/249 (63%), Positives = 195/249 (78%)

Query: 8   AFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGLI 67
           A  +++ +E+ RFTRIW QTL+PPAITM LYF+IFGNLIG +IG M GF+YMEYIVPGLI
Sbjct: 11  ALQTIVYREVKRFTRIWPQTLLPPAITMVLYFVIFGNLIGRQIGDMGGFTYMEYIVPGLI 70

Query: 68  MMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAV 127
           MMSVITNSY NV SSFF SKFQ++IEEL+V+PV  + I+ GY +GGV RGL+VG +VT +
Sbjct: 71  MMSVITNSYGNVVSSFFGSKFQRSIEELMVSPVSPHTILIGYTLGGVLRGLMVGVIVTLL 130

Query: 128 SLLFVDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTYLGGV 187
           SL F  LQV H G+ I  V LT+ +FSL G INAVFA+ FDDISI+PTFVLTPLTYLGGV
Sbjct: 131 SLFFTHLQVHHLGVTILVVVLTATIFSLLGFINAVFARNFDDISIIPTFVLTPLTYLGGV 190

Query: 188 FYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVALYCVAHYL 247
           FYSISLLP FWQ+VS  NP+++MVNAFRYG LGVSD+ I  +   ++   V LY     L
Sbjct: 191 FYSISLLPPFWQTVSLANPVLHMVNAFRYGILGVSDIKISVAITFMLVATVVLYIGCAKL 250

Query: 248 VTKGKGLRS 256
           +  G+G+R+
Sbjct: 251 LVSGRGMRT 259