Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score =  169 bits (429), Expect = 4e-47
 Identities = 91/251 (36%), Positives = 144/251 (57%), Gaps = 4/251 (1%)

Query: 7   TAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGL 66
           T + +LL KE  RF ++  QT+  P +T  LY ++FG+++  R+       Y  ++VPGL
Sbjct: 5   TGWRALLYKETLRFWKVGFQTVGAPVLTALLYLMVFGHVLEGRVTVYGTVGYTAFLVPGL 64

Query: 67  IMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTA 126
           +MMSV+ N+++N +SS   SK   N+  +L+ P+ ++     YV   + RGL VG  V  
Sbjct: 65  VMMSVLQNAFANSSSSIIQSKIMGNLVFVLLTPLSHWGWFFAYVGSSIIRGLAVGLGVFL 124

Query: 127 VSLLFV--DLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTYL 184
           V++LF   D     W I+ A   L + +    GLI  ++A+ FD +++   F++ P+T+L
Sbjct: 125 VTMLFAVPDFVAPLWIIVFA--LLGAAMLGTLGLIAGLWAEKFDQMAVFQNFLIMPMTFL 182

Query: 185 GGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVALYCVA 244
            GVFYSI  LP FWQ VS +NP  YM++ FRYGF GVSD     S  ++    + +  +A
Sbjct: 183 SGVFYSIGSLPPFWQKVSHLNPFFYMIDGFRYGFFGVSDASPWLSLGIVGTAWLVVSAIA 242

Query: 245 HYLVTKGKGLR 255
            +L+  G  +R
Sbjct: 243 VHLLRIGYKIR 253