Pairwise Alignments

Query, 256 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., Efflux ABC transporter, permease protein from Variovorax sp. SCN45

 Score = 62.0 bits (149), Expect = 1e-14
 Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 23  IWVQTLVPPAI----TMTLYFIIFGNLIGSRIGQMN----GFSYMEYIVPGLIMMSVITN 74
           +W +  +P  I       ++ + FG  +G+ +GQ++       Y+ ++  G I MS +  
Sbjct: 35  VWRKLAIPSLIGNIAEPLIWLVAFGYGMGALVGQVSVDDVKVPYILFLASGSICMSAMNA 94

Query: 75  -SYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAVSLLFVD 133
            S+  + S+F     QK  + ++ APV    I+   ++    + +     VTA+  + + 
Sbjct: 95  ASFEALYSAFSRMHVQKTWDGIMNAPVGLDDIVLAEMLWAAFKSIFT---VTAILFVMLG 151

Query: 134 LQVDHWG-IIIATVFLTS--VVFSLGGLINAVFAKTFDDISIVPTFVLTPLTYLGGVFYS 190
           L + H   +++A + L    + FS   LI    AK +D  +   T  +TP+ +L GVF+ 
Sbjct: 152 LGISHSPKLVVAWMVLVGAGITFSSVALIFNALAKGYDFFTYYFTLFMTPMMFLSGVFFP 211

Query: 191 ISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVALYCVAHYLVTK 250
           +  LP   ++V+   P+   V   R  F+           AVL  + V  + +A  L  K
Sbjct: 212 LEQLPAAVRAVAAWLPLTNAVALVRPLFMDQWPTGWWVHAAVLAVYAVVAFWIALALTRK 271