Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., Ribosomal RNA small subunit methyltransferase I from Xanthobacter sp. DMC5

 Score =  201 bits (510), Expect = 2e-56
 Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 8/274 (2%)

Query: 8   PNGAPILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHD 67
           P  +P L++V TPIGNL D+T RAL+ LA+ D+IA EDTR + +LL  + I T   A HD
Sbjct: 38  PGLSPGLHVVATPIGNLADVTVRALETLAAADVIACEDTRISRRLLDRYGIQTHLVAYHD 97

Query: 68  HNEQQKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVIT 127
           HN       L+ +L +G  +AL+SDAGTPL+SDPG+ LV +  +AG  V P+PG  A++ 
Sbjct: 98  HNGASARPKLLARLAAGERVALISDAGTPLVSDPGFKLVVEAAEAGFPVHPVPGASALLA 157

Query: 128 ALSASGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLG 187
           AL A+GLP+D F F+GFLP K+  R++++  +A V  T +FYE+  R+ ESL D+ DVL 
Sbjct: 158 ALVAAGLPTDCFLFDGFLPPKAGQRRNRISALAGVPGTLVFYETGPRLAESLADLADVL- 216

Query: 188 GEREVVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRD--AGEQQLPD 245
           G R   + RELTK FE ++   L  L    A D    KGE+VL++    +  AG+  +  
Sbjct: 217 GPRPAAVCRELTKAFEEVRRADLTALAAHYA-DAEPPKGEIVLVIGPPLEEAAGDADVDA 275

Query: 246 EALRTLTILTKELPLKKAAALVAEIHQLKKNALY 279
             +R L    K+  LK A A VA      K  +Y
Sbjct: 276 ALIRAL----KDTSLKDAVAAVAGATGRPKREVY 305