Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) from Variovorax sp. SCN45

 Score =  202 bits (515), Expect = 6e-57
 Identities = 124/281 (44%), Positives = 162/281 (57%), Gaps = 15/281 (5%)

Query: 14  LYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNIS---TKTFALHDHNE 70
           LY+V TPIGNL DIT RAL VL  VD IA EDTRHT  LL  + I     +  A+H HNE
Sbjct: 30  LYVVATPIGNLADITLRALHVLQLVDAIACEDTRHTQSLLRAYGIDRPGARLLAVHQHNE 89

Query: 71  QQKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALS 130
            + AQ +V +L  G  IA VSDAGTP +SDPG  L    R AG +V+PLPG  +V T + 
Sbjct: 90  AEAAQTVVARLAQGERIAYVSDAGTPGVSDPGARLAAAVRAAGQRVLPLPGASSVTTLVG 149

Query: 131 ASGLPSD--------SFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDM 182
           A+GL +D        +F F GFLP+K+  R   +  +++  R  +  E+PHRI ESL   
Sbjct: 150 AAGLVADGGDGNASSAFVFAGFLPSKAGERDTAVQALSQEPRAVVLLEAPHRI-ESLARA 208

Query: 183 LDVLGGEREVVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDAGEQQ 242
           L  L GER + + RELTK FE I  +  + L  W   D +R +GE  L++H    +G+  
Sbjct: 209 LATL-GERRITVGRELTKQFEEIATVAASALPDWFGADRDRTRGEFALVLHPVAVSGDGG 267

Query: 243 LPDEALRTLTILTKELPLKKAAALVAEIHQLKKNALYKWGL 283
              E  R L +L +ELP+K A  L AEI    +N LY+  L
Sbjct: 268 AEGE--RVLRLLLEELPVKTAVKLAAEISGSPRNTLYELAL 306