Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., rRNA small subunit methyltransferase I from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  199 bits (507), Expect = 4e-56
 Identities = 121/268 (45%), Positives = 157/268 (58%), Gaps = 6/268 (2%)

Query: 16  IVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQQKAQ 75
           +V TPIGNL DI  RAL VL+ VD +A EDTRHT  LL  + +     ALH+HNE + AQ
Sbjct: 1   MVATPIGNLADIGLRALQVLSLVDTVACEDTRHTAALLQGYGLHKPLLALHEHNEAEAAQ 60

Query: 76  VLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSASGLP 135
            +V +L  G  IA VSDAGTP +SDPG  LV     AG++ +P+PG  ++   LS +G  
Sbjct: 61  TVVQRLQEGQRIAYVSDAGTPGVSDPGARLVAAATAAGLRCLPIPGASSITALLSVAGHS 120

Query: 136 --SDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGEREVV 193
                F F GFL  K+  R+ ++ +I   +R C+  E+PHRI E+L   L  L G+R + 
Sbjct: 121 GWDGRFVFAGFLSPKAAERQREVQQIGADARACVLLEAPHRI-EALARELATL-GQRTLT 178

Query: 194 LARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGY-RDAGEQQLPD-EALRTL 251
           + RELTK FE I  MP      W+    +R +GE VL+VH    +A E    D  ALRTL
Sbjct: 179 VGRELTKQFEEIAPMPAEAFPGWLQSGTHRTRGEFVLVVHPLTAEAAEAGAVDAAALRTL 238

Query: 252 TILTKELPLKKAAALVAEIHQLKKNALY 279
            +L  ELPLK A  L AEI    +NALY
Sbjct: 239 DLLLAELPLKTAVRLCAEITGQPRNALY 266