Pairwise Alignments

Query, 288 a.a., rRNA (cytidine-2'-O-)-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., 16S rRNA (cytidine(1402)-2'-O)-methyltransferase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  168 bits (425), Expect = 1e-46
 Identities = 109/279 (39%), Positives = 156/279 (55%), Gaps = 9/279 (3%)

Query: 12  PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71
           P LY+V TPIGNL D+T RALDVLA+ D++  EDTR T KLL+ + +  +     DH   
Sbjct: 19  PGLYLVATPIGNLRDMTLRALDVLAAADLVLAEDTRVTAKLLSAYGLKARLERCDDHASG 78

Query: 72  QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131
           + A+  +++L  G  +ALVSDAGTPL+SDPG+ +       G+ V P+PG  +++ AL  
Sbjct: 79  RAAEQAIERLREGQVVALVSDAGTPLVSDPGFVVARAVIAEGLPVHPIPGASSLLAALCI 138

Query: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191
           +GLP+D   F GFLP K+  R   L  +    +T +F+ES  R+ +SL DM  VL G R 
Sbjct: 139 AGLPADRVLFAGFLPPKTAGRTAALEALKSQRQTLVFFESGPRLKDSLTDMTAVL-GPRP 197

Query: 192 VVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHGYRDAGEQQLPDEALRTL 251
             +ARELTK +E      L +L      D    KGE+V++V      GE+    EA    
Sbjct: 198 AAVARELTKLYEECVRGTLDDLAVDPRLDS--PKGEIVVVV----GPGEEVQATEADADA 251

Query: 252 TIL--TKELPLKKAAALVAEIHQLKKNALYKWGLENLGE 288
            ++   + L    AA+ VA+   L +  LY+  LE  G+
Sbjct: 252 ALIDALQTLSTGDAASEVAKALGLNRKTLYRRALELKGK 290