Pairwise Alignments

Query, 601 a.a., penicillin-binding protein activator from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

 Score =  183 bits (465), Expect = 2e-50
 Identities = 168/667 (25%), Positives = 278/667 (41%), Gaps = 79/667 (11%)

Query: 6   RRSVPRLLTPIALSIVLSACSTQPSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLI 65
           R    R L  +  +++ + C T         +       +  YL +   S  + + +W +
Sbjct: 8   RLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQL 67

Query: 66  MALKAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQLSFQA 125
           +A++A ++E    QA  L  +L  Q L   Q+ +  LL  ++    + +  A   L+   
Sbjct: 68  LAIRALVKEGKTGQAVELFNQLP-QELNDAQRREKTLLAVEIKLAQKDFAGAQNLLAKIT 126

Query: 126 NWSLPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYS 185
              L Q Q  +Y Q + D       S D  R L+A   L   K+K+   D  W  L+  +
Sbjct: 127 PADLEQNQQARYWQAKIDASQGRP-SIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMT 185

Query: 186 ASKIIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAI 245
             +   L    DE  L GWL L        +D   +K  +  W    P +P A   P  +
Sbjct: 186 QEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQL 245

Query: 246 TDILALEIVKPTNTALLLPLTGKFAKQAQFIRDGF-------------VFAMMNDADRQT 292
            ++ A +       ALLLPL G+ A   + I+ GF               A    AD   
Sbjct: 246 VNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAE 305

Query: 293 NATLTIIDTNAETLESVDAILTSKQ-----------------IDFVVGPLIKGNI----- 330
                 +D  A   ++  + LT +Q                 +     P  +  I     
Sbjct: 306 QPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSS 365

Query: 331 ----EKLQQFQQSRGQMI--PTLALNIPD-----------------QIDTTAGACYLALS 367
               + L Q QQ    ++  P L  N+ +                  I+     CY ALS
Sbjct: 366 QPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALS 425

Query: 368 PEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFGDKRQL 427
           PE E   AA+H+  QG + PL+L P+++ G+RV  AF +EW++     V    FG   +L
Sbjct: 426 PEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSEL 485

Query: 428 QRNINSIFGLQDSQQNIA-QMESLLGM-----GLESQPRSRR------DIDAVYIVANSS 475
           +  +N   G+  +   I  +  +  GM      L++ P   +       +DAVYIVA   
Sbjct: 486 RAGVNGGSGIALTGSPITLRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPG 545

Query: 476 ELTLIKPFIEVAINPDTRPPKLFSNSNS--NTGGRQYE-DLSGVTYSDIPLLI-QPAPSI 531
           E+  IKP I +  N       L+++S S   T G  +  ++ G+ YS+IP+L     P +
Sbjct: 546 EIAFIKPMIAMR-NGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLM 604

Query: 532 KEQLTQIWPESSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCVVQR 591
           ++ L+ +  + S A  R+ A+G+DA+ L     QM+ V+G+ I+G TG L+ +  CV+ R
Sbjct: 605 QQALSAVNNDYSLA--RMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINR 662

Query: 592 EISWAEH 598
            +SW ++
Sbjct: 663 NLSWLQY 669