Pairwise Alignments

Query, 601 a.a., penicillin-binding protein activator from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., penicillin-binding protein activator LpoA from Escherichia coli ECRC101

 Score =  157 bits (398), Expect = 1e-42
 Identities = 105/327 (32%), Positives = 172/327 (52%), Gaps = 23/327 (7%)

Query: 288 ADRQTNATLTIIDTNAETLESVDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTL 347
           A    +A L I DT+++ L  + + +       VVGPL+K N+E+L +        +  L
Sbjct: 350 APANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTP----LNVL 405

Query: 348 ALNIPDQIDTTAGACYLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEE 407
           ALN P+ I+     CY ALSPE E   AA+H+  QG + PL+L P+++ G+RV  AF +E
Sbjct: 406 ALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQE 465

Query: 408 WRRYSKNKVAVNLFGDKRQLQRNINSIFGLQDSQQNIAQMESL-LGM-----GLESQPRS 461
           W++     V    FG   +L+  +N   G+  +   I    +   GM      L++ P  
Sbjct: 466 WQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATTDSGMTTNNPTLQTTPTD 525

Query: 462 RR------DIDAVYIVANSSELTLIKPFIEVAINPDTRPPKLFSNSNS--NTGGRQYE-D 512
            +       +DAVYIVA   E+  IKP I +  N       L+++S S   T G  +  +
Sbjct: 526 DQFTNNGGRVDAVYIVATPGEIAFIKPMIAMR-NGSQSGATLYASSRSAQGTAGPDFRLE 584

Query: 513 LSGVTYSDIPLLI-QPAPSIKEQLTQIWPESSNAERRLQALGMDAYRLMVELPQMKIVEG 571
           + G+ YS+IP+L     P +++ L+ +  + S A  R+ A+G+DA+ L     QM+ V+G
Sbjct: 585 MEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLA--RMYAMGVDAWSLANHFSQMRQVQG 642

Query: 572 YTIDGQTGVLSIDEQCVVQREISWAEH 598
           + I+G TG L+ +  CV+ R++SW ++
Sbjct: 643 FEINGNTGSLTANPDCVINRKLSWLQY 669



 Score = 84.3 bits (207), Expect = 1e-20
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 2/275 (0%)

Query: 6   RRSVPRLLTPIALSIVLSACSTQPSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWLI 65
           R    R L  +  +++   C T         +       +  YL +   S  + + +W +
Sbjct: 8   RLKAARCLPVVLAALIFVGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQL 67

Query: 66  MALKAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQLSFQA 125
           +A++A ++E    QA  L  +L  Q L  +Q+ +  LL  ++    + +  A   L+   
Sbjct: 68  LAIRALVKEGKTGQAVELFNQLP-QELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKIT 126

Query: 126 NWSLPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYS 185
              L Q Q  +Y Q + D       S D  R L+A   L   K+K+   D  W  L+  +
Sbjct: 127 PADLEQNQQARYWQAKIDASQGRP-SIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMT 185

Query: 186 ASKIIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAI 245
             +   L    DE  L GWL L        +D   +K  +  W    P +P A   P  +
Sbjct: 186 QEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQL 245

Query: 246 TDILALEIVKPTNTALLLPLTGKFAKQAQFIRDGF 280
            ++ A +       ALLLPL G+ A   + I+ GF
Sbjct: 246 VNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGF 280