Pairwise Alignments

Query, 601 a.a., penicillin-binding protein activator from Vibrio cholerae E7946 ATCC 55056

Subject, 683 a.a., penicillin-binding protein activator from Dickeya dadantii 3937

 Score =  155 bits (391), Expect = 7e-42
 Identities = 107/317 (33%), Positives = 168/317 (52%), Gaps = 25/317 (7%)

Query: 298 IIDTNAETLESVDAILTSKQIDFVVGPLIKGNIEKLQQFQQSRGQMIPTLALNIPDQIDT 357
           + DT+ + L +V A         +VGPL+K  +E+L     +    +  LALN P+ I  
Sbjct: 365 VYDTSNQALANVIAQAQKDGATTIVGPLLKNEVEQLPGLNPT----LNVLALNQPEHIQP 420

Query: 358 TAGACYLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVA 417
               CY ALSPE E A AA+ +  QG ++PLILAP+   G+RVV AF + W++ +   V 
Sbjct: 421 NPNICYFALSPEDEAADAAQFIHKQGKQHPLILAPRGNLGDRVVAAFAKSWQQQAGGVVL 480

Query: 418 VNLFGDKRQLQRNINSIFGLQDSQQNIAQMES-------LLGMGLESQ------PRSRRD 464
               G    L++ +NS  G+  + Q +    S       + G+ + +Q        S  +
Sbjct: 481 QQRTGGVYDLKQALNSGAGIPLNGQPVITAASAPQPSTTVGGLTIPNQAPPIATATSDGN 540

Query: 465 IDAVYIVANSSELTLIKPFIEVAINPDTRPPKLFSNSNSNTGGRQYE---DLSGVTYSDI 521
           +DAVYI+A   ELTL+KP I++  N     P L+++S S   G   +   ++ G+ +SDI
Sbjct: 541 VDAVYIIATPDELTLLKPMIDMR-NKGALRPALYASSRSYQAGLGPDFRFEMEGLQFSDI 599

Query: 522 PLLIQPAPSIKEQL-TQIWPESSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGV 580
           PLL   +P++ +Q+ TQ   + S    RL A+GMDA++L     Q+    G ++ G TGV
Sbjct: 600 PLLTGASPALMQQISTQFRNDYSLV--RLFAMGMDAWKLASNFSQLH-QPGNSLSGATGV 656

Query: 581 LSIDEQCVVQREISWAE 597
           LS    CVV R+++W +
Sbjct: 657 LSTSPDCVVNRKLTWLQ 673



 Score = 75.9 bits (185), Expect = 5e-18
 Identities = 74/286 (25%), Positives = 114/286 (39%), Gaps = 14/286 (4%)

Query: 6   RRSVPRLLTPIALSIVLSACSTQPSSPDVVD--ITAQPLLTAQTYLMRADASQGNQQNDW 63
           R    RL+  +  ++ L+ C +Q          I  +   ++  YL +   S  + + DW
Sbjct: 8   RTHAGRLVPVMLAALFLAGCPSQAPQGTATQQHIEGKAGASSDYYLQQMQQSGDDSKADW 67

Query: 64  LIMALKAAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQLSF 123
            ++A+ A I+E    QA   +  L  Q L   Q+ + +LL A+L         A   L+ 
Sbjct: 68  QLLAIHALIQEGKLPQANGQLNALPSQ-LNDKQRQEQRLLLAELAVAQNDLNAANSTLAQ 126

Query: 124 QANWSLPQVQWQQYHQLRADIFTALDR-SFDSTRELVALYGLSSNKDKEALADQIWANLN 182
               SL   Q ++Y+Q +  I  A DR S    R  +    L      +   DQ WA L 
Sbjct: 127 LDVKSLSPQQQERYYQTQ--IKAAQDRPSLMLIRAYIGQEPLLQGDAHQRNIDQTWAALT 184

Query: 183 HYSASKIIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTP 242
             +   +  +    DE  L GWL L    +T       L+  +E W    P+HPAA   P
Sbjct: 185 RLTQQDMGSMVINVDENTLQGWLDLLNLWQTKAQVPSDLQAAIEDWKRRYPRHPAAKQLP 244

Query: 243 KAITDILALEIVKPTNT--------ALLLPLTGKFAKQAQFIRDGF 280
             +         +P +         ALLLPL G+    A  I+ GF
Sbjct: 245 SQLGGTPPAAAAQPGDNAPAGGNAIALLLPLNGQAQVFANAIQQGF 290