Pairwise Alignments

Query, 456 a.a., serine endoprotease DegQ from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., PDZ domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  268 bits (685), Expect = 3e-76
 Identities = 177/491 (36%), Positives = 268/491 (54%), Gaps = 54/491 (10%)

Query: 15  SLSAILSPLPATAALPLSVNGEQIPSLAP-----MLEKVTPAVVSIAVEGTQVSRQRLPD 69
           SL+A+   + A A + L V G       P     + E++ PAVV+I+   T    Q  P+
Sbjct: 9   SLAALRRLIGALAVIALLVPGSSRAGAPPGGFADLAERLLPAVVNISTTQTMKPSQGGPE 68

Query: 70  QFRFFFGPDFPTEQL----------------QERPFRGLGSGVIINADKGYVVTNYHVIN 113
             +F   P  P E+                   R    LGSG II+A  GY+VTN HVI 
Sbjct: 69  LPQF--PPGSPLEEFFKEFMERQQGGKSPDAPSRKATSLGSGFIIDA-AGYIVTNNHVIA 125

Query: 114 GAEKIRVKLYDGREFDAELVGGDEMSDVALLKLNKAKN-LTEIRIADSDKLRVGDFAVAI 172
            A++I VKL+D   F A LVG D   D+ALLK+   K  L  +   +SD  RVGD+ +AI
Sbjct: 126 DADEISVKLHDDTVFQATLVGRDPKVDLALLKIEPGKKPLVPVPFGNSDDARVGDWVLAI 185

Query: 173 GNPFGLGQTVTSGIVSALGRSGLNIENFENFIQTDAAINSGNSGGALVNLNGELIGINTA 232
           GNPFG G TVT+GIVSA  R  +N   +++F+QTDAAIN GNSGG + N+ GE+IGIN+A
Sbjct: 186 GNPFGFGGTVTAGIVSARARD-INAGPYDDFLQTDAAINRGNSGGPMFNMRGEVIGINSA 244

Query: 233 ILGPNGGNVGIGFAIPSNMMKNLTDQILEFGEVKRGMLGVQGGEITSELADALGYESSKG 292
           I+ P+GG++GIGFA+P+++   + D + +FG+V+RG LG++   + +++A+ +G    KG
Sbjct: 245 IISPSGGSIGIGFAVPASLAVPVLDDLRKFGKVRRGWLGIRIQSLDTDMAENIGLPDQKG 304

Query: 293 AFVSQVVPDSAADKAGIKAGDIITSLNGKKIDTFSELRAKVATLGAGKTITLGVLRDGKN 352
           A V++V P+    KAG+K GD++   +GK I     L   VA+   GK + + + RDGK 
Sbjct: 305 ALVAKVDPNGPGVKAGLKDGDVVLKFDGKDITEMRRLPRYVASTPIGKKVEVVIWRDGKR 364

Query: 353 QNIDVTLGE------QQNAKTKAES----------LHQGLSGAELSNTTD--------SD 388
           Q I  ++GE      +Q  K K E+          L    +G  +S+ T          D
Sbjct: 365 QTITASVGEMPEDPAEQQVKGKPETPKPQAGKDGILTIPGAGLTVSSPTPQLRERFGLDD 424

Query: 389 PIQGVKVTEVQKGSAAESYQLQKDDIIIGVNRKRVKNIAELRAIMEK----SPNILALNI 444
             +G+ VTEV+  S A    ++  D+II  + K V++ A+L  ++E+        L L +
Sbjct: 425 EAKGIVVTEVKPDSPAAEKGMRPGDMIIEADHKPVRSPADLGKLIEEGRRAGAKSLLLRV 484

Query: 445 QRGERTLYLVV 455
           +  ++  Y+ +
Sbjct: 485 ENPQQLRYIAL 495