Pairwise Alignments

Query, 456 a.a., serine endoprotease DegQ from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., PDZ domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  281 bits (719), Expect = 3e-80
 Identities = 180/456 (39%), Positives = 266/456 (58%), Gaps = 21/456 (4%)

Query: 18  AILSPLPATAALPLSVNG--EQIP-SLAPMLEKVTPAVVSI---AVEGTQVSRQRLPDQF 71
           A++  +PA  A    V G  EQ+  + AP+  +V PAVV+I    V     S       F
Sbjct: 28  ALVILVPAAQAQTQVVPGSREQVKLTFAPVARQVAPAVVNIYTKRVVRAAASPLFADPFF 87

Query: 72  RFFFGPDFPTEQLQERPFRGLGSGVIINADKGYVVTNYHVINGAEKIRVKLYDGREFDAE 131
           R FFG D P    QER  R LGSGV+I AD G VVTN+HVI  A+++ V L D REF+A 
Sbjct: 88  RRFFG-DVPGMS-QERVQRSLGSGVLIAAD-GTVVTNHHVIKDADEVTVVLSDRREFEAR 144

Query: 132 LVGGDEMSDVALLKLNKAK-NLTEIRIADSDKLRVGDFAVAIGNPFGLGQTVTSGIVSAL 190
           +VG D+ +D+A+LK++  + +   + + DSD + VGD  +A+GNPFG+GQTVT GIVSAL
Sbjct: 145 IVGSDDRTDLAVLKIDGGRESFPTLTLGDSDAIEVGDVVMAVGNPFGVGQTVTQGIVSAL 204

Query: 191 GRSGLNIENFENFIQTDAAINSGNSGGALVNLNGELIGINTAILGPNGGNVGIGFAIPSN 250
            R+ + + + ++FIQTDAAIN GNSGGALV+L G LIGINTAI   +GG+ GIGFAIP+ 
Sbjct: 205 ARTNVGVSDVQSFIQTDAAINPGNSGGALVDLQGRLIGINTAIYSKDGGSNGIGFAIPTA 264

Query: 251 MMKNLTDQILEFGEVKRGMLGVQGGEITSELADALGYESSKGAFVSQVVPDSAADKAGIK 310
           +++ +   I + G+V R  LG  G  +T++LA AL      G  V+ +  +S A + G+ 
Sbjct: 265 LVRQVAASIAKGGKVVRPWLGASGQAVTADLAQALKLPRPIGVLVNHIHGESPAARGGLA 324

Query: 311 AGDIITSLNGKKIDTFSELRAKVATLGAGKTITLGVLRDGKNQNIDVTLGEQQNAKTKAE 370
            GDII ++ G+++D    +R ++ATL  G    L VLR+G  + I V L        + +
Sbjct: 325 DGDIIVAVEGREVDDPEGMRFRLATLPIGADARLTVLRNGAERTITVRLVAPPETPPRDK 384

Query: 371 SLHQG---LSGAELSNTTD--------SDPIQGVKVTEVQKGSAAESYQLQKDDIIIGVN 419
           +   G    SGA L N           +  + GV +  +++GS A    LQ  D+++ +N
Sbjct: 385 TDIAGRNPFSGATLVNLNPALAEEIGINSGLTGVMIFAIKRGSVANRLGLQPGDMLMKIN 444

Query: 420 RKRVKNIAELRAIMEKSPNILALNIQRGERTLYLVV 455
            + V ++A+ R ++E      A+ I+R    + LV+
Sbjct: 445 ERPVSSVADARRLLEAEQPRWAITIKRNGEVMSLVL 480