Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., PDZ domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  194 bits (494), Expect = 3e-54
 Identities = 111/277 (40%), Positives = 163/277 (58%), Gaps = 7/277 (2%)

Query: 79  LGSGVIVSEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEGTGLP 138
           LGSG I+   GYI+TN HV+A AD+I V L D     A LVG+D + D+A+L++E    P
Sbjct: 105 LGSGFIIDAAGYIVTNNHVIADADEISVKLHDDTVFQATLVGRDPKVDLALLKIEPGKKP 164

Query: 139 VIPL---NPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADGRQAFIQTDAAI 195
           ++P+   N D   +VGD VLAIGNP+  G T T GI+SA  R  I+A     F+QTDAAI
Sbjct: 165 LVPVPFGNSD-DARVGDWVLAIGNPFGFGGTVTAGIVSARARD-INAGPYDDFLQTDAAI 222

Query: 196 NDGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRG 255
           N GNSGG + N +GE++GIN+A    +    + GI FA+P SLA  ++  +   G+V RG
Sbjct: 223 NRGNSGGPMFNMRGEVIGINSAIISPSGG--SIGIGFAVPASLAVPVLDDLRKFGKVRRG 280

Query: 256 YIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQN 315
           ++G+  Q +++  +  +G     G ++  VDPNGP  +AG  + D++LK DGK I   + 
Sbjct: 281 WLGIRIQSLDTDMAENIGLPDQKGALVAKVDPNGPGVKAGLKDGDVVLKFDGKDITEMRR 340

Query: 316 VTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGEDTRD 352
           +   V     G  V+  + R G+   +  ++GE   D
Sbjct: 341 LPRYVASTPIGKKVEVVIWRDGKRQTITASVGEMPED 377



 Score = 28.5 bits (62), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 274 NEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKI 310
           ++   GI++  V P+ PAA  G    D++++ D K +
Sbjct: 423 DDEAKGIVVTEVKPDSPAAEKGMRPGDMIIEADHKPV 459