Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., PDZ domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  221 bits (564), Expect = 2e-62
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 27/356 (7%)

Query: 13  LLAAIAIIMVTPSLRAKLMPVVEQPRNIGALQISFNEAVRKAAPAVVNIYNRKYSENDRR 72
           L AA+A++++ P+ +A+   V   P +   ++++F    R+ APAVVNIY ++       
Sbjct: 23  LAAALALVILVPAAQAQTQVV---PGSREQVKLTFAPVARQVAPAVVNIYTKRVVRAAAS 79

Query: 73  KLSI--------------------QGLGSGVIVSEKGYIITNYHVVAQADQIVVALQDGR 112
            L                      + LGSGV+++  G ++TN+HV+  AD++ V L D R
Sbjct: 80  PLFADPFFRRFFGDVPGMSQERVQRSLGSGVLIAADGTVVTNHHVIKDADEVTVVLSDRR 139

Query: 113 AAAAQLVGKDRRTDIAVLRVEG--TGLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFG 170
              A++VG D RTD+AVL+++G     P + L      +VGDVV+A+GNP+ +GQT T G
Sbjct: 140 EFEARIVGSDDRTDLAVLKIDGGRESFPTLTLGDSDAIEVGDVVMAVGNPFGVGQTVTQG 199

Query: 171 IISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGI 230
           I+SA  R+++     Q+FIQTDAAIN GNSGGALV+ QG L+GINTA + +  D  + GI
Sbjct: 200 IVSALARTNVGVSDVQSFIQTDAAINPGNSGGALVDLQGRLIGINTAIYSK--DGGSNGI 257

Query: 231 SFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGP 290
            FAIP +L  ++   I   G+V+R ++G  GQ + +  ++ L      G+++  +    P
Sbjct: 258 GFAIPTALVRQVAASIAKGGKVVRPWLGASGQAVTADLAQALKLPRPIGVLVNHIHGESP 317

Query: 291 AARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTI 346
           AAR G  + DI++ ++G++++  + +   +  L  G     T+LR G E  + V +
Sbjct: 318 AARGGLADGDIIVAVEGREVDDPEGMRFRLATLPIGADARLTVLRNGAERTITVRL 373



 Score = 24.6 bits (52), Expect = 0.006
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 274 NEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTL 333
           N  + G++I  +     A R G    D+L+KI+ + ++   +    +   +P   +  T+
Sbjct: 412 NSGLTGVMIFAIKRGSVANRLGLQPGDMLMKINERPVSSVADARRLLEAEQPRWAI--TI 469

Query: 334 LRKGEEIVL 342
            R GE + L
Sbjct: 470 KRNGEVMSL 478