Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., HtrA protease/chaperone protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  200 bits (509), Expect = 6e-56
 Identities = 114/285 (40%), Positives = 173/285 (60%), Gaps = 4/285 (1%)

Query: 69  NDRRKLSIQGLGSGVIV-SEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDI 127
           N  ++     LGSGVI+ + KGY++TN HVV  A  I V L DGR   A++VGKD R+DI
Sbjct: 104 NGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNASVIKVQLSDGRKFDAKVVGKDPRSDI 163

Query: 128 AVLRVEGT-GLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADGRQ 186
           A+++++    L  I L      +VGD  +AIGNP+ LG+T T GI+SA GRS ++ +  +
Sbjct: 164 ALIQIQNPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNVENYE 223

Query: 187 AFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKIMTKI 246
            FIQTDAAIN GNSGGALVN  GEL+GINTA    A D    GI FAIP ++   + +++
Sbjct: 224 NFIQTDAAINRGNSGGALVNLNGELIGINTAIL--APDGGNIGIGFAIPSNMVKNLTSQM 281

Query: 247 IADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKID 306
           +  G+V RG +G+ G ++NS  ++ +  +   G  +  V PN  AA+AG    D++  ++
Sbjct: 282 VEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAGDVITSLN 341

Query: 307 GKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGEDTR 351
           GK I+    +   V  +  G+ +   LLR+G+ I + + + + ++
Sbjct: 342 GKPISSFAALRAQVGTMPVGSKISLGLLREGKAITVNLELQQSSQ 386



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 62/302 (20%), Positives = 114/302 (37%), Gaps = 66/302 (21%)

Query: 34  VEQPRNIGALQISFNEAVRKA--APAVVNIYNRKYSENDRRKLSIQGLG----SGVI--V 85
           ++ P+N+ A++++ ++A+R      A+ N +               GLG    SG++  +
Sbjct: 168 IQNPKNLTAIKLADSDALRVGDYTVAIGNPF---------------GLGETVTSGIVSAL 212

Query: 86  SEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEGTGLPVIPLNPD 145
              G  + NY    Q D    A+  G +  A          +  L  E  G+    L PD
Sbjct: 213 GRSGLNVENYENFIQTD---AAINRGNSGGA----------LVNLNGELIGINTAILAPD 259

Query: 146 YHPKVGDVVLAIGNPYNLGQTTTFGIIS--ATGRSSISADGRQAFIQTDAAINDGNSGGA 203
                G++ +    P N+ +  T  ++      R  +   G +   +   A+      GA
Sbjct: 260 G----GNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGA 315

Query: 204 LV-----NTQGELVGINTASFQQATDLETYGIS-FAI------PYSLASKIMTKIIADGR 251
            V     N+     GI        T L    IS FA          + SKI   ++ +G+
Sbjct: 316 FVSQVMPNSSAAKAGIKAGDV--ITSLNGKPISSFAALRAQVGTMPVGSKISLGLLREGK 373

Query: 252 VIRGYIGVDGQ-----DINSMTSRLLGNEHVG-----GIIILGVDPNGPAARAGFLEQDI 301
            I   + +        D +++ S + G E        G+++  V  N PAA+ G  + D+
Sbjct: 374 AITVNLELQQSSQSQVDSSTIFSGIEGAEMSNKGQDKGVVVSSVKANSPAAQIGLKKGDV 433

Query: 302 LL 303
           ++
Sbjct: 434 II 435