Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., serine endoprotease, periplasmic (NCBI) from Escherichia coli BW25113

 Score =  203 bits (517), Expect = 6e-57
 Identities = 128/359 (35%), Positives = 200/359 (55%), Gaps = 24/359 (6%)

Query: 13  LLAAIAIIMVTPSLRAKLMPVVEQPRNIG--ALQISFNEAVRKAAPAVVNI--------- 61
           LL+A+A+  V  +L A    V   P  +   A   S    + K  PAVV++         
Sbjct: 7   LLSALAL-SVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLPAVVSVRVEGTASQG 65

Query: 62  ------YNRKYSEN--DRRKLSIQGLGSGVIVS-EKGYIITNYHVVAQADQIVVALQDGR 112
                 + + + ++  D+     +GLGSGVI++  KGY++TN HV+ QA +I + L DGR
Sbjct: 66  QKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGR 125

Query: 113 AAAAQLVGKDRRTDIAVLRVEGTG-LPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGI 171
              A+L+G D ++DIA+L+++    L  I +      +VGD  +A+GNP+ LGQT T GI
Sbjct: 126 EFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGI 185

Query: 172 ISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGIS 231
           +SA GRS ++ +G + FIQTDA+IN GNSGGAL+N  GEL+GINTA    A    + GI 
Sbjct: 186 VSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAIL--APGGGSVGIG 243

Query: 232 FAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPA 291
           FAIP ++A  +  ++I  G + RG +G+ G ++++  ++    +   G  +  V P   +
Sbjct: 244 FAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGS 303

Query: 292 ARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGEDT 350
           A+AG    DI+  ++GK +N    +   +    PGT V   LLR G+ + + VT+   T
Sbjct: 304 AKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTST 362



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 279 GIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGE 338
           GI I  V    PAA+AG  + D+++ ++  ++N    +   V   +P  ++   ++R  E
Sbjct: 391 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMR-KVLAAKP-AIIALQIVRGNE 448

Query: 339 EIVL 342
            I L
Sbjct: 449 SIYL 452