Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., periplasmic serine protease, Do/DeqQ family from Enterobacter asburiae PDN3

 Score =  200 bits (508), Expect = 7e-56
 Identities = 114/288 (39%), Positives = 176/288 (61%), Gaps = 4/288 (1%)

Query: 67  SENDRRKLSIQGLGSGVIV-SEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRT 125
           S+   ++     LGSGVI+ + KGY++TN HVV  A+ I V L DGR   A++VGKD R+
Sbjct: 105 SQGGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNANSIKVQLSDGRKFDAKVVGKDPRS 164

Query: 126 DIAVLRVEGT-GLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADG 184
           DIA+++++    L  I +      +VGD  +AIGNP+ LG+T T GI+SA GRS ++A+ 
Sbjct: 165 DIALIQIQDPKNLTAIKIADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN 224

Query: 185 RQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKIMT 244
            + FIQTDAAIN GNSGGALVN  GEL+GINTA    A D    GI FAIP ++   + +
Sbjct: 225 YENFIQTDAAINRGNSGGALVNLNGELIGINTAIL--APDGGNIGIGFAIPSNMVKNLTS 282

Query: 245 KIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLK 304
           +++  G+V RG +G+ G ++NS  ++ +  +   G  +  V PN  AA+AG    D++  
Sbjct: 283 QMVQYGQVKRGELGILGTELNSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAGDVITS 342

Query: 305 IDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGEDTRD 352
           ++GK I+    +   V  +  G+ V   LLR G+ + + + + + +++
Sbjct: 343 LNGKPISSFAALRAEVGSMPIGSKVTLGLLRDGKPVNVSLELQQSSQN 390



 Score = 27.7 bits (60), Expect = 6e-04
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 238 LASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVG----------GIIILGVDP 287
           + SK+   ++ DG+ +   + +     N + S  + +   G          G+++  V  
Sbjct: 363 IGSKVTLGLLRDGKPVNVSLELQQSSQNQVDSSTIFSGIEGAEMSNKGADKGVVVNNVKA 422

Query: 288 NGPAARAGFLEQDILL 303
           N PAAR G  + D+++
Sbjct: 423 NSPAARIGLKKGDVIM 438