Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  194 bits (494), Expect = 3e-54
 Identities = 128/321 (39%), Positives = 179/321 (55%), Gaps = 22/321 (6%)

Query: 43  LQISFNEAVRKAAPAVVNIYNRKYSENDRRKLSI-------QG-------LGSGVIVSEK 88
           L +SF EA  ++  +VV I N  +S  D R+ SI       QG        GSGVI SE 
Sbjct: 65  LPVSFVEASERSTESVVFIKN--FSGTDYRRYSIFDYFFGPQGGSPQRVSTGSGVIFSED 122

Query: 89  GYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEGTGLPVIPLNPDYHP 148
           GYIITN HVV  A+ + V  Q  +   A+L+G D  TDIAVL+V+  GLP I        
Sbjct: 123 GYIITNNHVVEDAETLEVIHQK-KTYKAKLIGTDPNTDIAVLKVDAEGLPAIKKGSSRDL 181

Query: 149 KVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADG---RQAFIQTDAAINDGNSGGALV 205
           ++G+ V+A+GNP+NL  T T GI+SA  R      G    ++FIQTDAAIN GNSGGALV
Sbjct: 182 QIGEWVIAVGNPFNLTSTVTAGIVSAKERQINILGGDFPLESFIQTDAAINPGNSGGALV 241

Query: 206 NTQGELVGINTASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDIN 265
           N  GELVGINTA   +      YG  FA+P  +A+KI   +I  G V +   GV  ++I 
Sbjct: 242 NVNGELVGINTAILSKTGTYTGYG--FAVPVDIAAKIANDLINYGEVQKAIPGVSTEEIT 299

Query: 266 SMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRP 325
              +  +G E + G+I+  +  NG A +AG    DI++ ID  ++NG+ +  + ++   P
Sbjct: 300 PEIAEKMGLESLDGVIVNHIIRNGAAEKAGMEVGDIIIGIDDTEVNGKGSFEEALSYHYP 359

Query: 326 GTVVDFTLLRKGEEIVLPVTI 346
           G  V    LR+ ++    +T+
Sbjct: 360 GDQVTLRYLRENKQKRADITL 380