Pairwise Alignments

Query, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., serine endoprotease (protease Do), membrane-associated from Escherichia coli BL21

 Score =  199 bits (505), Expect = 2e-55
 Identities = 112/276 (40%), Positives = 173/276 (62%), Gaps = 4/276 (1%)

Query: 79  LGSGVIV-SEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEGT-G 136
           LGSGVI+ ++KGY++TN HVV  A  I V L DGR   A++VGKD R+DIA+++++    
Sbjct: 113 LGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN 172

Query: 137 LPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADGRQAFIQTDAAIN 196
           L  I +      +VGD  +AIGNP+ LG+T T GI+SA GRS ++A+  + FIQTDAAIN
Sbjct: 173 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 232

Query: 197 DGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRGY 256
            GNSGGALVN  GEL+GINTA    A D    GI FAIP ++   + ++++  G+V RG 
Sbjct: 233 RGNSGGALVNLNGELIGINTAIL--APDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGE 290

Query: 257 IGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNV 316
           +G+ G ++NS  ++ +  +   G  +  V PN  AA+AG    D++  ++GK I+    +
Sbjct: 291 LGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAAL 350

Query: 317 TDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGEDTRD 352
              V  +  G+ +   LLR G+++ + + + + +++
Sbjct: 351 RAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQN 386



 Score = 24.6 bits (52), Expect = 0.005
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 238 LASKIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVG----------GIIILGVDP 287
           + SK+   ++ DG+ +   + +     N + S  + N   G          G+++  V  
Sbjct: 359 VGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKT 418

Query: 288 NGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLR 324
             PAA+ G  + D++       I   Q     + +LR
Sbjct: 419 GTPAAQIGLKKGDVI-------IGANQQAVKNIAELR 448